tintoodiel: Tinto and Odiel estuary geochemistry

In ade4: Analysis of Ecological Data: Exploratory and Euclidean Methods in Environmental Sciences

Tinto and Odiel estuary geochemistry

Description

This data set contains informations about geochemical characteristics of heavy metal pollution in surface sediments of the Tinto and Odiel river estuary (south-western Spain).

Usage

data(tintoodiel)

Format

tintoodiel is a list with the following components:

xy

a data frame that contains spatial coordinates of the 52 sites

tab

a data frame with 12 columns (concentration of heavy metals) and 52 rows (sites)

neig

an object of class neig

nb

the neighbourhood graph of the 52 sites (an object of class nb)

Source

Borrego, J., Morales, J.A., de la Torre, M.L. and Grande, J.A. (2002) Geochemical characteristics of heavy metal pollution in surface sediments of the Tinto and Odiel river estuary (south-western Spain). Environmental Geology, 41, 785–796.

Examples

data(tintoodiel)
if(!adegraphicsLoaded()) {
  ## Not run: 
  if(requireNamespace("pixmap", quietly = TRUE)) {
    estuary.pnm <- pixmap::read.pnm(system.file("pictures/tintoodiel.pnm", package = "ade4"))
    s.label(tintoodiel$xy, pixmap = estuary.pnm, neig = tintoodiel$neig,
      clab = 0, cpoi = 2, cneig = 3, addax = FALSE, cgrid = 0, grid = FALSE)
  }
## End(Not run)
  
  estuary.pca <- dudi.pca(tintoodiel$tab, scan = FALSE, nf = 4)
  
  if(requireNamespace("spdep", quietly = TRUE)) {
    estuary.listw <- spdep::nb2listw(neig2nb(tintoodiel$neig))
    estuary.pca.ms <- multispati(estuary.pca, estuary.listw, scan = FALSE, nfposi = 3, nfnega = 2)
    summary(estuary.pca.ms)
    par(mfrow = c(1, 2))
    barplot(estuary.pca$eig)
    barplot(estuary.pca.ms$eig)
    par(mfrow = c(1, 1))
}}

ade4 documentation built on Feb. 16, 2023, 7:58 p.m.