ExampleTrees: Example Ig lineage trees
In alakazam: Immunoglobulin Clonal Lineage and Diversity Analysis
ExampleTrees R Documentation
Example Ig lineage trees
Description
A set of Ig lineage trees generated from the ExampleDb file, subset to
only those trees with at least four nodes.
Usage
ExampleTrees
Format
A list of igraph objects output by buildPhylipLineage.
Each node of each tree has the following annotations (vertex attributes):
-
sample_id: Sample identifier(s). Time in relation to vaccination.
-
c_call: Isotype assignment(s).
-
duplication_count: Copy count (number of duplicates) of the sequence.
See Also
ExampleTrees
alakazam documentation built on Sept. 30, 2023, 9:07 a.m.
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| ExampleTrees | R Documentation |
Example Ig lineage trees
Description
A set of Ig lineage trees generated from the ExampleDb file, subset to
only those trees with at least four nodes.
Usage
ExampleTrees
Format
A list of igraph objects output by buildPhylipLineage. Each node of each tree has the following annotations (vertex attributes):
-
sample_id: Sample identifier(s). Time in relation to vaccination. -
c_call: Isotype assignment(s). -
duplication_count: Copy count (number of duplicates) of the sequence.
See Also
ExampleTrees
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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