alakazam: Immunoglobulin Clonal Lineage and Diversity Analysis

Provides methods for high-throughput adaptive immune receptor repertoire sequencing (AIRR-Seq; Rep-Seq) analysis. In particular, immunoglobulin (Ig) sequence lineage reconstruction, lineage topology analysis, diversity profiling, amino acid property analysis and gene usage. Citations: Gupta and Vander Heiden, et al (2017) <doi:10.1093/bioinformatics/btv359>, Stern, Yaari and Vander Heiden, et al (2014) <doi:10.1126/scitranslmed.3008879>.

Package details

AuthorJason Vander Heiden [aut, cre], Namita Gupta [aut], Susanna Marquez [ctb], Daniel Gadala-Maria [ctb], Ruoyi Jiang [ctb], Nima Nouri [ctb], Steven Kleinstein [aut, cph]
MaintainerJason Vander Heiden <[email protected]>
LicenseCC BY-SA 4.0
Version0.2.11
URL http://alakazam.readthedocs.org
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("alakazam")

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alakazam documentation built on Sept. 21, 2018, 6:26 p.m.