Files in alakazam
Immunoglobulin Clonal Lineage and Diversity Analysis
MD5
NEWS.md
README.md
NAMESPACE
DESCRIPTION
R/RcppExports.R
R/sysdata.rda
R/Diversity.R
R/Gene.R
R/Alakazam.R
R/Topology.R
R/Classes.R
R/Fastq.R
R/Core.R
R/Sequence.R
R/Data.R
R/Deprecated.R
R/AminoAcids.R
R/Lineage.R
src/RcppExports.cpp
src/RcppDistance.cpp
inst/CITATION
inst/doc/Fastq-Vignette.pdf
inst/doc/Topology-Vignette.R
inst/doc/Files-Vignette.R
inst/doc/Files-Vignette.pdf
inst/doc/AminoAcids-Vignette.pdf
inst/doc/Diversity-Vignette.Rmd
inst/doc/Topology-Vignette.Rmd
inst/doc/GeneUsage-Vignette.R
inst/doc/Lineage-Vignette.R
inst/doc/GeneUsage-Vignette.Rmd
inst/doc/GeneUsage-Vignette.pdf
inst/doc/Diversity-Vignette.R
inst/doc/AminoAcids-Vignette.Rmd
inst/doc/Fastq-Vignette.Rmd
inst/doc/Lineage-Vignette.Rmd
inst/doc/Topology-Vignette.pdf
inst/doc/AminoAcids-Vignette.R
inst/doc/Lineage-Vignette.pdf
inst/doc/Diversity-Vignette.pdf
inst/doc/Files-Vignette.Rmd
inst/doc/Fastq-Vignette.R
inst/extdata/example_changeo.tab.gz
inst/extdata/example_quality.fastq
inst/extdata/example_quality.tsv
inst/extdata/example_airr.tsv.gz
build/vignette.rds
build/partial.rdb
vignettes/Diversity-Vignette.Rmd
vignettes/Topology-Vignette.Rmd
vignettes/GeneUsage-Vignette.Rmd
vignettes/AminoAcids-Vignette.Rmd
vignettes/Fastq-Vignette.Rmd
vignettes/Lineage-Vignette.Rmd
vignettes/Files-Vignette.Rmd
data/ExampleTrees.rda
data/ExampleDb.rda
data/SingleDb.rda
data/Example10x.rda
data/ExampleDbChangeo.rda
man/Example10x.Rd
man/maskSeqGaps.Rd
man/rarefyDiversity.Rd
man/stoufferMeta.Rd
man/isValidAASeq.Rd
man/EdgeTest-class.Rd
man/ChangeoClone-class.Rd
man/maskSeqEnds.Rd
man/polar.Rd
man/plotAbundanceCurve.Rd
man/seqDist.Rd
man/sortGenes.Rd
man/getSegment.Rd
man/ExampleDb.Rd
man/plotMRCATest.Rd
man/IUPAC_CODES.Rd
man/IMGT_REGIONS.Rd
man/MRCATest-class.Rd
man/readIgphyml.Rd
man/translateStrings.Rd
man/maskPositionsByQuality.Rd
man/translateDNA.Rd
man/gravy.Rd
man/testMRCA.Rd
man/countGenes.Rd
man/DEFAULT_COLORS.Rd
man/pairwiseDist.Rd
man/graphToPhylo.Rd
man/testEdges.Rd
man/estimateAbundance.Rd
man/plotSubtrees.Rd
man/aminoAcidProperties.Rd
man/buildPhylipLineage.Rd
man/permuteLabels.Rd
man/getDNAMatrix.Rd
man/cpuCount.Rd
man/countClones.Rd
man/seqEqual.Rd
man/plotDiversityTest.Rd
man/tableEdges.Rd
man/getMRCA.Rd
man/baseTheme.Rd
man/ExampleTrees.Rd
man/SingleDb.Rd
man/charge.Rd
man/bulk.Rd
man/writeChangeoDb.Rd
man/getAAMatrix.Rd
man/summarizeSubtrees.Rd
man/getPathLengths.Rd
man/junctionAlignment.Rd
man/checkColumns.Rd
man/calcDiversity.Rd
man/countPatterns.Rd
man/calcCoverage.Rd
man/ExampleDbChangeo.Rd
man/alakazam.Rd
man/pairwiseEqual.Rd
man/ABBREV_AA.Rd
man/alphaDiversity.Rd
man/makeTempDir.Rd
man/padSeqEnds.Rd
man/combineIgphyml.Rd
man/groupGenes.Rd
man/AbundanceCurve-class.Rd
man/alakazam-package.Rd
man/progressBar.Rd
man/readFastqDb.Rd
man/getPositionQuality.Rd
man/extractVRegion.Rd
man/phyloToGraph.Rd
man/readChangeoDb.Rd
man/plotDiversityCurve.Rd
man/gridPlot.Rd
man/makeChangeoClone.Rd
man/collapseDuplicates.Rd
man/nonsquareDist.Rd
man/DiversityCurve-class.Rd
man/testDiversity.Rd
man/plotEdgeTest.Rd
man/aliphatic.Rd
