getDNAMatrix returns a Hamming distance matrix for IUPAC ambiguous
DNA characters with modifications for gap,
c("-", "."), and missing,
c("?"), character values.
getDNAMatrix(gap = -1)
value to assign to characters in the set
matrix of DNA character distances with row and column names
indicating the character pair. By default, distances will be either 0
(equivalent), 1 (non-equivalent or missing), or -1 (gap).
Creates DNA distance matrix for seqDist. See getAAMatrix for amino acid distances.
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