isValidAASeq: Validate amino acid sequences
In alakazam: Immunoglobulin Clonal Lineage and Diversity Analysis
isValidAASeq R Documentation
Validate amino acid sequences
Description
isValidAASeq checks that a set of sequences are valid non-ambiguous
amino acid sequences. A sequence is considered valid if it contains only
characters in the the non-ambiguous IUPAC character set or any characters in
c("X", ".", "-", "*").
Usage
isValidAASeq(seq)
Arguments
seq
character vector of sequences to check.
Value
A logical vector with TRUE for each valid amino acid sequences
and FALSE for each invalid sequence.
See Also
See ABBREV_AA for the set of non-ambiguous amino acid characters.
See IUPAC_AA for the full set of ambiguous amino acid characters.
Examples
seq <- c("CARDRSTPWRRGIASTTVRTSW", "XXTQMYVR--XX", "CARJ", "10")
isValidAASeq(seq)
alakazam documentation built on Sept. 30, 2023, 9:07 a.m.
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| isValidAASeq | R Documentation |
Validate amino acid sequences
Description
isValidAASeq checks that a set of sequences are valid non-ambiguous
amino acid sequences. A sequence is considered valid if it contains only
characters in the the non-ambiguous IUPAC character set or any characters in
c("X", ".", "-", "*").
Usage
isValidAASeq(seq)
Arguments
seq |
character vector of sequences to check. |
Value
A logical vector with TRUE for each valid amino acid sequences
and FALSE for each invalid sequence.
See Also
See ABBREV_AA for the set of non-ambiguous amino acid characters. See IUPAC_AA for the full set of ambiguous amino acid characters.
Examples
seq <- c("CARDRSTPWRRGIASTTVRTSW", "XXTQMYVR--XX", "CARJ", "10")
isValidAASeq(seq)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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