getAAMatrix: Build an AA distance matrix
In alakazam: Immunoglobulin Clonal Lineage and Diversity Analysis
getAAMatrix R Documentation
Build an AA distance matrix
Description
getAAMatrix returns a Hamming distance matrix for IUPAC ambiguous
amino acid characters.
Usage
getAAMatrix(gap = 0)
Arguments
gap
value to assign to characters in the set c("-", ".").
Value
A matrix of amino acid character distances with row and column names
indicating the character pair.
See Also
Creates an amino acid distance matrix for seqDist.
See getDNAMatrix for nucleotide distances.
Examples
getAAMatrix()
alakazam documentation built on Sept. 30, 2023, 9:07 a.m.
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| getAAMatrix | R Documentation |
Build an AA distance matrix
Description
getAAMatrix returns a Hamming distance matrix for IUPAC ambiguous
amino acid characters.
Usage
getAAMatrix(gap = 0)
Arguments
gap |
value to assign to characters in the set |
Value
A matrix of amino acid character distances with row and column names
indicating the character pair.
See Also
Creates an amino acid distance matrix for seqDist. See getDNAMatrix for nucleotide distances.
Examples
getAAMatrix()
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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