Description Usage Arguments Value See Also Examples

`testEdges`

performs a permutation test on a set of lineage trees to determine
the significance of an annotation's association with parent-child relationships.

1 2 |

`graphs` |
list of igraph objects with vertex annotations. |

`field` |
string defining the annotation field to permute. |

`indirect` |
if |

`exclude` |
vector of strings defining |

`nperm` |
number of permutations to perform. |

`progress` |
if |

An EdgeTest object containing the test results and permutation realizations.

Uses tableEdges and permuteLabels. See plotEdgeTest for plotting the permutation distributions.

1 2 3 4 5 6 | ```
# Define example tree set
graphs <- ExampleTrees[1-10]
# Perform edge test on isotypes
x <- testEdges(graphs, "ISOTYPE", nperm=10)
print(x)
``` |

alakazam documentation built on April 1, 2018, 11:58 a.m.

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