translateDNA: Translate nucleotide sequences to amino acids
In alakazam: Immunoglobulin Clonal Lineage and Diversity Analysis
translateDNA R Documentation
Translate nucleotide sequences to amino acids
Description
translateDNA translates nucleotide sequences to amino acid sequences.
Usage
translateDNA(seq, trim = FALSE)
Arguments
seq
vector of strings defining DNA sequence(s) to be converted to translated.
trim
boolean flag to remove 3 nts from both ends of seq
(converts IMGT junction to CDR3 region).
Value
A vector of translated sequence strings.
See Also
translate.
Examples
# Translate a single sequence
translateDNA("ACTGACTCGA")
# Translate a vector of sequences
translateDNA(ExampleDb$junction[1:3])
# Remove the first and last codon from the translation
translateDNA(ExampleDb$junction[1:3], trim=TRUE)
alakazam documentation built on Sept. 30, 2023, 9:07 a.m.
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| translateDNA | R Documentation |
Translate nucleotide sequences to amino acids
Description
translateDNA translates nucleotide sequences to amino acid sequences.
Usage
translateDNA(seq, trim = FALSE)
Arguments
seq |
vector of strings defining DNA sequence(s) to be converted to translated. |
trim |
boolean flag to remove 3 nts from both ends of seq (converts IMGT junction to CDR3 region). |
Value
A vector of translated sequence strings.
See Also
translate.
Examples
# Translate a single sequence
translateDNA("ACTGACTCGA")
# Translate a vector of sequences
translateDNA(ExampleDb$junction[1:3])
# Remove the first and last codon from the translation
translateDNA(ExampleDb$junction[1:3], trim=TRUE)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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