addBacktransforms.alldiffs | Adds or recalculates the backtransforms component of an... |
addSpatialModel.asrtests | Adds, to a supplied model, a spatial model that accounts for... |
addSpatialModelOnIC.asrtests | Uses information criteria to decide whether to add a spatial... |
addto.test.summary | Adds a row to a 'test.summary' 'data.frame'. |
allDifferences.data.frame | Using supplied predictions and standard errors of pairwise... |
alldiffs.object | Description of an alldiffs object |
angular | Applies the angular transformation to proportions. |
angular.mod | Applies the modified angular transformation to a vector of... |
as.alldiffs | Forms an 'alldiffs.object' from the supplied predictions,... |
as.asrtests | Forms an asrtests object that stores (i) a fitted asreml... |
as.predictions.frame | Forms a 'predictions.frame' from a 'data.frame', ensuring... |
asremlPlus-deprecated | Deprecated Functions in the Package asremlPlus |
asremlPlus-package | Augments 'ASReml-R' in Fitting Mixed Models and Packages... |
asremlPlusTips | The randomly-presented, startup tips. |
asrtests.object | Description of an asrtests object |
bootREMLRT.asreml | Uses the parametric bootstrap to calculate the p-value for a... |
changeModelOnIC.asrtests | Uses information criteria to decide whether to change an... |
changeTerms.asrtests | Adds and drops terms from one or both of the fixed or random... |
ChickpeaEnd | A large data set comprising the end of imaging data from a... |
chooseModel | Determines the set of significant terms using p-values and... |
chooseModel.asrtests | Determines and records the set of significant terms using an... |
chooseModel.data.frame | Determines the set of significant terms from results stored... |
chooseSpatialModelOnIC.asrtests | Uses information criteria to choose the best fitting spatial... |
convAsremlobj.asreml | Recreates an 'asreml' object so that it is compatible with... |
convEffectNames2DataFrame.asreml | Converts the effects names for a term stored in the component... |
estimateV.asreml | Forms the estimated variance, random or residual matrix for... |
exploreLSDs.alldiffs | Explores the computed LSD values for pairwise differences... |
facCombine.alldiffs | Combines several factors into one in the components of an... |
facRecast.alldiffs | Reorders and/or revises the factor levels using the order of... |
facRename.alldiffs | Renames 'factor's in the 'prediction' component of an... |
getASRemlVersionLoaded | Finds the version of asreml that is loaded and returns the... |
getFormulae.asreml | Gets the formulae from an asreml object. |
getTestEntry.asrtests | Gets the entry for a test recorded in the test.summary... |
getTestPvalue.asrtests | Gets the p-value for a test recorded in the test.summary... |
infoCriteria.asreml | Computes AIC and BIC for models. |
is.alldiffs | Tests whether an object is of class alldiffs |
is.asrtests | Tests whether an object is of class asrtests |
isCompoundSymmetric.matrix | Tests whether an object of class matrix is compound symmetric |
is.predictions.frame | Tests whether an object is of class predictions.frame |
iterate.asrtests | Subject the fitted 'asreml.obj' stored in an... |
Ladybird.dat | Data for an experiment to investigate whether ladybirds... |
linTransform.alldiffs | Calculates a linear transformation of the predictions stored... |
loadASRemlVersion | Ensures that a specific version of 'asreml' is loaded. |
LSD.frame | Description of an LSD frame |
makeTPPSplineMats.data.frame | Make the spline basis matrices and data needed to fit Tensor... |
newfit.asreml | Refits an 'asreml' model with changed arguments by... |
num.recode | Recodes the unique values of a vector using the values in a... |
Oats.dat | Data for an experiment to investigate nitrogen response of 3... |
pairdiffsTransform.alldiffs | Calculates the differences between nominated pairs of... |
permute.square | Permutes the rows and columns of a square matrix. |
permute.to.zero.lowertri | Permutes a square matrix until all the lower triangular... |
pickLSDstatistics.alldiffs | Pick LSDstatistics whose values minimize the number of errors... |
plotLSDerrors.alldiffs | Plots a map of the errors that occur in using the computed... |
plotLSDerrors.data.frame | Plots a map of the supplied errors that occur in using the... |
plotLSDs.alldiffs | Plots a heat map of computed LSD values for pairwise... |
plotLSDs.data.frame | Plots a heat map of computed LSD-values for pairwise... |
plotPredictions.data.frame | Plots the predictions for a term, possibly with error bars. |
plotPvalues.alldiffs | Plots a heat map of p-values for pairwise differences between... |
plotPvalues.data.frame | Plots a heat map of p-values for pairwise differences between... |
plotVariofaces.data.frame | Plots empirical variogram faces, including envelopes, from... |
powerTransform | Performs a combination of a linear and a power transformation... |
predictions.frame | Description of a predictions object |
predictPlus.asreml | Forms the predictions for a term, their pairwise differences... |
predictPresent.asreml | Forms the predictions for each of one or more terms and... |
print.alldiffs | Prints the values in an 'alldiffs.object' in a nice format. |
print.asrtests | Prints the values in an 'asrtests.object' |
printFormulae.asreml | Prints the formulae from an asreml object. |
print.LSDdata | Prints the components of a list containing data on the LSDs... |
print.predictions.frame | Prints the values in a 'predictions.frame', with or without... |
print.test.summary | Prints a data.frame containing a test.summary. |
print.wald.tab | Prints a data.frame containing a Wald or pseudoanova table. |
R2adj.asreml | Calculates the adjusted coefficient of determination for a... |
ratioTransform.alldiffs | Calculates the ratios of nominated pairs of predictions... |
recalcLSD.alldiffs | Adds or recalculates the 'LSD.frame' that is a component of... |
recalcWaldTab.asrtests | Recalculates the denDF, F.inc and P values for a table of... |
redoErrorIntervals.alldiffs | Adds or replaces the error intervals stored in a prediction... |
REMLRT.asreml | Performs a REML ratio test to compare two models. |
renewClassify.alldiffs | Renews the components in an 'alldiffs.object' according to a... |
reparamSigDevn.asrtests | Reparamterizes each random (deviations) term involving... |
rmboundary.asrtests | Removes any boundary or singular variance components from the... |
setvarianceterms.call | allows the setting of bounds and initial values for terms in... |
simulate.asreml | Produce sets of simulated data from a multivariate normal... |
sort.alldiffs | Sorts the components in an 'alldiffs.object' according to the... |
sort.predictions.frame | Sorts a 'predictions.frame' according to the predicted values... |
subset.alldiffs | Subsets the components in an 'alldiffs.object' according to... |
subset.list | Forms a 'list' that contains a subset of the components of... |
testranfix.asrtests | Tests for a single fixed or random term in model fitted using... |
testresidual.asrtests | Fits a new residual formula, tests whether the change is... |
testswapran.asrtests | Tests, using a REMLRT, the significance of the difference... |
validAlldiffs | Checks that an object is a valid alldiffs object. |
validAsrtests | Checks that an object is a valid asrtests object. |
validPredictionsFrame | Checks that an object is a valid predictions.frame. |
variofaces.asreml | Plots empirical variogram faces, including envelopes, as... |
WaterRunoff.dat | Data for an experiment to investigate the quality of water... |
Wheat.dat | Data for a 1976 experiment to investigate 25 varieties of... |
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