| addBacktransforms.alldiffs | Adds or recalculates the backtransforms component of an... |
| addSpatialModel.asrtests | Adds, to a supplied model, a spatial model that accounts for... |
| addSpatialModelOnIC.asrtests | Uses information criteria to decide whether to add a spatial... |
| addto.test.summary | Adds a row to a 'test.summary' 'data.frame'. |
| allDifferences.data.frame | Using supplied predictions and standard errors of pairwise... |
| alldiffs.object | Description of an alldiffs object |
| angular | Applies the angular transformation to proportions. |
| angular.mod | Applies the modified angular transformation to a vector of... |
| as.alldiffs | Forms an 'alldiffs.object' from the supplied predictions,... |
| as.asrtests | Forms an asrtests object that stores (i) a fitted asreml... |
| as.predictions.frame | Forms a 'predictions.frame' from a 'data.frame', ensuring... |
| asremlPlus-deprecated | Deprecated Functions in the Package asremlPlus |
| asremlPlus-package | Augments 'ASReml-R' in Fitting Mixed Models and Packages... |
| asremlPlusTips | The randomly-presented, startup tips. |
| asrtests.object | Description of an asrtests object |
| bootREMLRT.asreml | Uses the parametric bootstrap to calculate the p-value for a... |
| changeModelOnIC.asrtests | Uses information criteria to decide whether to change an... |
| changeTerms.asrtests | Adds and drops terms from one or both of the fixed or random... |
| ChickpeaEnd | A large data set comprising the end of imaging data from a... |
| chooseModel | Determines the set of significant terms using p-values and... |
| chooseModel.asrtests | Determines and records the set of significant terms using an... |
| chooseModel.data.frame | Determines the set of significant terms from results stored... |
| chooseSpatialModelOnIC.asrtests | Uses information criteria to choose the best fitting spatial... |
| convAsremlobj.asreml | Recreates an 'asreml' object so that it is compatible with... |
| estimateV.asreml | Forms the estimated variance, random or residual matrix for... |
| exploreLSDs.alldiffs | Explores the computed LSD values for pairwise differences... |
| facCombine.alldiffs | Combines several factors into one in the components of an... |
| facRecast.alldiffs | Reorders and/or revises the factor levels using the order of... |
| facRename.alldiffs | Renames 'factor's in the 'prediction' component of an... |
| getASRemlVersionLoaded | Finds the version of asreml that is loaded and returns the... |
| getFormulae.asreml | Gets the formulae from an asreml object. |
| getTestEntry.asrtests | Gets the entry for a test recorded in the test.summary... |
| getTestPvalue.asrtests | Gets the p-value for a test recorded in the test.summary... |
| infoCriteria.asreml | Computes AIC and BIC for models. |
| is.alldiffs | Tests whether an object is of class alldiffs |
| is.asrtests | Tests whether an object is of class asrtests |
| is.predictions.frame | Tests whether an object is of class predictions.frame |
| iterate.asrtests | Subject the fitted 'asreml.obj' stored in an... |
| Ladybird.dat | Data for an experiment to investigate whether ladybirds... |
| linTransform.alldiffs | Calculates a linear transformation of the predictions stored... |
| loadASRemlVersion | Ensures that a specific version of 'asreml' is loaded. |
| LSD.frame | Description of an LSD frame |
| makeTPPSplineMats.data.frame | Make the spline basis matrices and data needed to fit Tensor... |
| newfit.asreml | Refits an 'asreml' model with changed arguments by... |
| num.recode | Recodes the unique values of a vector using the values in a... |
| Oats.dat | Data for an experiment to investigate nitrogen response of 3... |
| pairdiffsTransform.alldiffs | Calculates the differences between nominated pairs of... |
| permute.square | Permutes the rows and columns of a square matrix. |
| permute.to.zero.lowertri | Permutes a square matrix until all the lower triangular... |
| pickLSDstatistics.alldiffs | Pick LSDstatistics whose values minimize the number of errors... |
| plotLSDerrors.alldiffs | Plots a map of the errors that occur in using the computed... |
| plotLSDerrors.data.frame | Plots a map of the supplied errors that occur in using the... |
| plotLSDs.alldiffs | Plots a heat map of computed LSD values for pairwise... |
| plotLSDs.data.frame | Plots a heat map of computed LSD-values for pairwise... |
| plotPredictions.data.frame | Plots the predictions for a term, possibly with error bars. |
| plotPvalues.alldiffs | Plots a heat map of p-values for pairwise differences between... |
| plotPvalues.data.frame | Plots a heat map of p-values for pairwise differences between... |
| plotVariofaces.data.frame | Plots empirical variogram faces, including envelopes, from... |
| powerTransform | Performs a combination of a linear and a power transformation... |
| predictions.frame | Description of a predictions object |
| predictPlus.asreml | Forms the predictions for a term, their pairwise differences... |
| predictPresent.asreml | Forms the predictions for each of one or more terms and... |
| print.alldiffs | Prints the values in an 'alldiffs.object' in a nice format. |
| print.asrtests | Prints the values in an 'asrtests.object' |
| printFormulae.asreml | Prints the formulae from an asreml object. |
| print.LSDdata | Prints the components of a list containing data on the LSDs... |
| print.predictions.frame | Prints the values in a 'predictions.frame', with or without... |
| print.test.summary | Prints a data.frame containing a test.summary. |
| print.wald.tab | Prints a data.frame containing a Wald or pseudoanova table. |
| ratioTransform.alldiffs | Calculates the ratios of nominated pairs of predictions... |
| recalcLSD.alldiffs | Adds or recalculates the 'LSD.frame' that is a component of... |
| recalcWaldTab.asrtests | Recalculates the denDF, F.inc and P values for a table of... |
| redoErrorIntervals.alldiffs | Adds or replaces the error intervals stored in a prediction... |
| REMLRT.asreml | Performs a REML ratio test to compare two models. |
| renewClassify.alldiffs | Renews the components in an 'alldiffs.object' according to a... |
| reparamSigDevn.asrtests | Reparamterizes each random (deviations) term involving... |
| rmboundary.asrtests | Removes any boundary or singular variance components from the... |
| setvarianceterms.call | allows the setting of bounds and initial values for terms in... |
| simulate.asreml | Produce sets of simulated data from a multivariate normal... |
| sort.alldiffs | Sorts the components in an 'alldiffs.object' according to the... |
| sort.predictions.frame | Sorts a 'predictions.frame' according to the predicted values... |
| subset.alldiffs | Subsets the components in an 'alldiffs.object' according to... |
| subset.list | Forms a 'list' that contains a subset of the components of... |
| testranfix.asrtests | Tests for a single fixed or random term in model fitted using... |
| testresidual.asrtests | Fits a new residual formula, tests whether the change is... |
| testswapran.asrtests | Tests, using a REMLRT, the significance of the difference... |
| validAlldiffs | Checks that an object is a valid alldiffs object. |
| validAsrtests | Checks that an object is a valid asrtests object. |
| validPredictionsFrame | Checks that an object is a valid predictions.frame. |
| variofaces.asreml | Plots empirical variogram faces, including envelopes, as... |
| WaterRunoff.dat | Data for an experiment to investigate the quality of water... |
| Wheat.dat | Data for a 1976 experiment to investigate 25 varieties of... |
