Files in bakR
Analyze and Compare Nucleotide Recoding RNA Sequencing Datasets
configure
MD5
NEWS.md
README.md
NAMESPACE
DESCRIPTION
LICENSE
configure.win
R/TL_stan.R
R/Simulations.R
R/stanmodels.R
R/GSprocessing.R
R/Dropout_correction.R
R/bakR-package.R
R/Fitting_Models.R
R/fns_data.R
R/QC.R
R/Visualizations.R
R/bakRData.R
R/GS_table_data.R
R/Fast_analysis.R
R/cBprocessing.R
R/NSSHeat.R
R/cB_small_data.R
R/metadf_data.R
src/stanExports_MCMC2.cc
src/Makevars.win
src/stanExports_MCMC_NSS.h
src/RcppExports.cpp
src/stanExports_MCMC2.h
src/stanExports_Hybrid_NSS.h
src/stanExports_Hybrid.cc
src/stanExports_Mutrate_est.cc
src/stanExports_Hybrid.h
src/stanExports_Hybrid_NSS.cc
src/stanExports_MCMC_NSS.cc
src/stanExports_Mutrate_est.h
inst/include/stan_meta_header.hpp
inst/doc/bakR-Quickstart.R
inst/doc/Getting-Started.Rmd
inst/doc/NSS.html
inst/doc/Differential-Synth.Rmd
inst/doc/bakR-Quickstart.html
inst/doc/Troubleshooting.html
inst/doc/Differential-Synth.R
inst/doc/Differential-Synth.html
inst/doc/bakR-Fn.R
inst/doc/Dropout.R
inst/doc/NSS.R
inst/doc/bakR-Quickstart.Rmd
inst/doc/bakR-Fn.Rmd
inst/doc/Dropout.Rmd
inst/doc/Getting-Started.R
inst/doc/Troubleshooting.R
inst/doc/NSS.Rmd
inst/doc/Getting-Started.html
inst/doc/Troubleshooting.Rmd
inst/doc/Dropout.html
inst/doc/bakR-Fn.html
inst/stan/Mutrate_est.stan
inst/stan/Hybrid_NSS.stan
inst/stan/MCMC_NSS.stan
inst/stan/MCMC2.stan
inst/stan/Hybrid.stan
inst/stan/include/license.stan
build/vignette.rds
vignettes/Getting-Started.Rmd
vignettes/NSS_Analysis.png
vignettes/Differential-Synth.Rmd
vignettes/bakR-Quickstart.Rmd
vignettes/bakR-Fn.Rmd
vignettes/Dropout.Rmd
vignettes/NSS.Rmd
vignettes/Troubleshooting.Rmd
data/fns.rda
data/GS_table.rda
data/cB_small.rda
data/metadf.rda
man/QC_checks.Rd
man/CorrectDropout.Rd
man/bakR-package.Rd
man/bakRFit.Rd
man/new_bakRData.Rd
man/QuantifyDropout.Rd
man/new_bakRFnData.Rd
man/metadf.Rd
man/Heatmap_kdeg.Rd
man/Simulate_bakRData.Rd
man/plotVolcano.Rd
man/cBprocess.Rd
man/avg_and_regularize.Rd
man/fast_analysis.Rd
man/validate_bakRFnData.Rd
man/plotMA.Rd
man/DissectMechanism.Rd
man/fns.Rd
man/bakRFnData.Rd
man/reliableFeatures.Rd
man/GS_table.Rd
man/validate_bakRData.Rd
man/FnPCA.Rd
man/FnPCA2.Rd
man/GSprocessing.Rd
man/Simulate_relative_bakRData.Rd
man/bakRData.Rd
man/TL_stan.Rd
man/NSSHeat.Rd
man/fn_process.Rd
man/VisualizeDropout.Rd
man/cB_small.Rd
man/figures/NSS_Analysis.png
man/figures/logo.png
