download.database.all: Download all elements of an NCBI databse

Description Usage Arguments Value Author(s) See Also Examples

View source: R/download_database_all.R

Description

The download.database functions allows users to retrieve individual packages of a NCBI database. This function is designed to retrieve the entire database selected by the users (hence all packages corresponding to this database).

Usage

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Arguments

db

a character string specifying the database that shall be downloaded (selected from listDatabases).

path

a character string specifying the location (a folder) in which the corresponding database shall be stored. In case this folder does not exist yet, it will be created.

Value

A character vector storing the file paths of the downloaded databases.

Author(s)

Hajk-Georg Drost

See Also

download.database, listNCBIDatabases

Examples

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## Not run: 
# search for available NCBI databases
  listNCBIDatabases(db = "all")
# choose database NCBI nr and download compelete database
  download.database.all(db = "nr", path = "nr")

## End(Not run)

biomartr documentation built on July 2, 2018, 1:02 a.m.