getSummaryFile: Helper function to retrieve the assembly_summary.txt file...

Description Usage Arguments Author(s) See Also Examples

View source: R/getSummaryFile.R

Description

Retrieval function of the assembly_summary.txt file from NCBI.

Usage

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getSummaryFile(db, kingdom)

Arguments

db

database name. E.g. refseq or genbank.

kingdom

kingdom for which assembly_summary.txt file shall be retrieved. See also getKingdoms.

Author(s)

Hajk-Georg Drost

See Also

getKingdomAssemblySummary, getMetaGenomeSummary

Examples

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## Not run:  
test <- getSummaryFile("refseq","plant")
test

## End(Not run)

biomartr documentation built on July 2, 2018, 1:02 a.m.