getGroups: Retrieve available groups for a kingdom of life

Description Usage Arguments Author(s) See Also Examples

View source: R/getGroups.R

Description

A short list of available groups for a kingdom of life.

Usage

1
getGroups(db = "refseq", kingdom)

Arguments

db

a character string specifying the database from which the genome shall be retrieved:

  • db = "refseq"

  • db = "genbank"

Default is db = "refseq".

kingdom

a character string specifying for which kingdom of life groups shall be retrieved. See getKingdoms for details.

Author(s)

Hajk-Georg Drost

See Also

meta.retrieval, getGenome, getProteome, getCDS, getKingdoms

Examples

 1
 2
 3
 4
 5
 6
 7
 8
 9
10
11
12
# get possible kigdom names
getKingdoms(db = "refseq")
## Not run: 
# retrieve subgroups for vertebrate_mammalian available from refseq
getGroups(db = "refseq", kingdom = "vertebrate_mammalian")

# get possible kigdom names
getKingdoms(db = "genbank")
# retrieve subgroups for vertebrate_mammalian available from genbank
getGroups(db = "genbank", kingdom = "vertebrate_mammalian")

## End(Not run)

biomartr documentation built on July 2, 2018, 1:02 a.m.