getENSEMBLInfo: Retrieve ENSEMBL info file

In biomartr: Genomic Data Retrieval

Retrieve ENSEMBL info file

Description

Retrieve species and genome information from http://rest.ensembl.org/info/species?content-type=application/json/.

Usage

getENSEMBLInfo(update = TRUE)

Arguments

update

logical, default TRUE. Update cached list, if FALSE use existing (if it exists)

Value

a tibble table storing info for all available ENSEMBL divisions.

Author(s)

Hajk-Georg Drost

See Also

ensembl_divisions, get.ensembl.info, getKingdomAssemblySummary

Examples

## Not run: 
# look at available divisions
ensembl_divisions()
# retrieve information for all ENSEMBL divisions at once
test <- getENSEMBLInfo()
test
# retrieve information for a particular ENSEMBL division (e.g. EnsemblVertebrates)
test_vertebrates <- get.ensembl.info(update = TRUE, division = "EnsemblVertebrates")
test_vertebrates

## End(Not run)

biomartr documentation built on Oct. 25, 2023, 1:08 a.m.