Files in biomartr
Genomic Data Retrieval

MD5
README.md NEWS.md
NAMESPACE
DESCRIPTION
R/listNCBIDatabases.R R/utils.R R/getFilters.R R/listDatabases.R R/listMetaGenomes.R R/getSummaryFile.R R/getENSEMBLGENOMES.gtf.R R/read_cds.R R/getCDS.R R/meta.retrieval.R R/getAttributes.R R/organismBM.R R/listGroups.R R/read_proteome.R R/getReleases.R R/getENSEMBL.Seq.R R/getGenome.R R/custom_download.R R/read_assemblystats.R R/getAssemblyStats.R R/getMarts.R R/getENSEMBL.Annotation.R R/getKingdomAssemblySummary.R R/biomart.R R/meta.retrieval.all.R R/read_rm.R R/getMetaGenomeSummary.R R/toupper_first_char.R R/read_md5file.R R/is.genome.available.R R/exists.ftp.file.R R/refseqOrganisms.R R/getENSEMBLInfo.R R/getENSEMBLGENOMES.Annotation.R R/getMetaGenomeAnnotations.R R/getGO.R R/getDatasets.R R/listGenomes.R R/is.ensembl.alive.R R/download_database.R R/getENSEMBL.gtf.R R/getRepeatMasker.R R/biomartr-package.R R/getRNA.R R/read_rna.R R/connected.to.internet.R R/getSubMarts.R R/getGTF.R R/getENSEMBLGENOMES.Seq.R R/is.ensemblgenomes.alive.R R/organismAttributes.R R/read_genome.R R/get.ensembl.info.R R/getMetaGenomes.R R/getProteome.R R/organismFilters.R R/get.ensemblgenome.info.R R/getGFF.R R/listKingdoms.R R/existingOrganisms.R R/read_gff.R R/getGroups.R R/existingOrganisms_ensembl.R R/getGENOMEREPORT.R R/getKingdoms.R R/getENSEMBLGENOMESInfo.R R/download_database_all.R vignettes/BioMart_Examples.Rmd vignettes/Introduction.Rmd vignettes/Database_Retrieval.Rmd vignettes/Functional_Annotation.Rmd vignettes/Sequence_Retrieval.Rmd vignettes/MetaGenome_Retrieval.Rmd tests/testthat.R tests/testthat/test-getAssemblyStats.R tests/testthat/test-getENSEMBLGENOMESInfo.R tests/testthat/test-organismFilters.R tests/testthat/test-getGENOMEREPORT.R tests/testthat/test-getKingdomAssemblySummary.R tests/testthat/test-getCDS.R tests/testthat/test-getMetaGenomeAnnotations.R tests/testthat/test-getMarts.R tests/testthat/test-getGFF.R tests/testthat/test-organismBM.R tests/testthat/test-getKingdoms().R tests/testthat/test-organismAttributes.R tests/testthat/test-getProteome.R tests/testthat/test-biomart.R tests/testthat/test-getENSEMBLInfo.R tests/testthat/test-getGenome.R tests/testthat/test-getFilters.R tests/testthat/test-getDatasets.R tests/testthat/test-getRNA.R tests/testthat/test-getGroups().R tests/testthat/test-download.database.R tests/testthat/test-getAttributes.R tests/testthat/test-getMetaGenomeSummary.R tests/testthat/test-is.genome.available.R
build/vignette.rds
inst/CITATION
inst/seqs/ortho_thal_aa.fasta
inst/seqs/ortho_lyra_cds.fasta
inst/seqs/ortho_lyra_aa.fasta
inst/doc/MetaGenome_Retrieval.Rmd
inst/doc/Database_Retrieval.html
inst/doc/Functional_Annotation.Rmd
inst/doc/Functional_Annotation.html
inst/doc/Database_Retrieval.Rmd inst/doc/MetaGenome_Retrieval.R
inst/doc/MetaGenome_Retrieval.html
inst/doc/Sequence_Retrieval.html
inst/doc/Sequence_Retrieval.R
inst/doc/Introduction.html
inst/doc/Functional_Annotation.R
inst/doc/BioMart_Examples.html
inst/doc/Introduction.R inst/doc/BioMart_Examples.R inst/doc/Introduction.Rmd inst/doc/Sequence_Retrieval.Rmd inst/doc/BioMart_Examples.Rmd inst/doc/Database_Retrieval.R man/download.database.Rd man/getCDS.Rd man/getMetaGenomeAnnotations.Rd man/read_proteome.Rd man/listDatabases.Rd man/getKingdoms.Rd man/read_rm.Rd man/getMetaGenomeSummary.Rd man/getAssemblyStats.Rd man/getMarts.Rd man/meta.retrieval.all.Rd man/getMetaGenomes.Rd man/is.genome.available.Rd man/getRepeatMasker.Rd man/read_rna.Rd man/getFilters.Rd man/getKingdomAssemblySummary.Rd man/listGroups.Rd man/organismFilters.Rd man/getENSEMBLGENOMESInfo.Rd man/getProteome.Rd man/getReleases.Rd man/meta.retrieval.Rd man/getGO.Rd man/read_gff.Rd man/getGenome.Rd man/getAttributes.Rd man/read_assemblystats.Rd man/biomart.Rd man/listMetaGenomes.Rd man/getENSEMBLInfo.Rd man/getGTF.Rd man/download.database.all.Rd man/read_genome.Rd man/getGFF.Rd man/listKingdoms.Rd man/refseqOrganisms.Rd man/listGenomes.Rd man/getSummaryFile.Rd man/getGroups.Rd man/getRNA.Rd man/organismBM.Rd man/organismAttributes.Rd man/getGENOMEREPORT.Rd man/getDatasets.Rd man/biomartr-package.Rd man/read_cds.Rd
biomartr documentation built on Jan. 3, 2018, 9:17 a.m.