Files in biomartr
Genomic Data Retrieval
MD5
NEWS.md
README.md
NAMESPACE
DESCRIPTION
R/summary_cds.R
R/listMetaGenomes.R
R/getGFF.R
R/tidy_name.R
R/read_cds.R
R/clean_species_names_helper.R
R/readAssemblyDoc.R
R/getGenome.R
R/listKingdoms.R
R/meta.retrieval.R
R/getGENOMEREPORT.R
R/getGroups.R
R/existingOrganisms_ensembl.R
R/check_annotation_biomartr.R
R/getProteome.R
R/listGroups.R
R/download_database.R
R/getMetaGenomeSummary.R
R/Refseq_Genbank_post_processing.R
R/getReleases.R
R/biomart.R
R/is.ensembl.alive.R
R/organismBM.R
R/getENSEMBL.R
R/getUniProtSTATS.R
R/getRepeatMasker.R
R/getENSEMBLInfo.R
R/get.ensembl.info.R
R/N50.R
R/getENSEMBLGENOMES.R
R/getMarts.R
R/getUniProtInfo.R
R/connected.to.internet.R
R/biomartr-package.R
R/getSet.R
R/getCDS.R
R/getSummaryFile.R
R/getKingdomAssemblySummary.R
R/getAssemblyStats.R
R/messages.R
R/organismAttributes.R
R/getBioSet.R
R/read_md5file.R
R/getRNA.R
R/listGenomes.R
R/getDatasets.R
R/getSubMarts.R
R/meta.retrieval.all.R
R/Refseq_Genbank_ftp_generics.R
R/read_gff.R
R/listDatabases.R
R/clean.retrieval.R
R/getMetaGenomeAnnotations.R
R/read_rm.R
R/exists.ftp.file.R
R/getGO.R
R/getAttributes.R
R/refseqOrganisms.R
R/test_url_status.R
R/listNCBIDatabases.R
R/organismFilters.R
R/existingOrganisms.R
R/getUniProtSeq.R
R/ensembl_ftp_generics.R
R/getMetaGenomes.R
R/download_database_all.R
R/read_assemblystats.R
R/getKingdoms.R
R/getFilters.R
R/getCollection.R
R/read_rna.R
R/custom_download.R
R/summary_genome.R
R/is.genome.available.R
R/read_genome.R
R/utils.R
R/read_proteome.R
inst/CITATION
inst/doc/Functional_Annotation.html
inst/doc/BioMart_Examples.R
inst/doc/Database_Retrieval.R
inst/doc/MetaGenome_Retrieval.html
inst/doc/MetaGenome_Retrieval.Rmd
inst/doc/Functional_Annotation.Rmd
inst/doc/Sequence_Retrieval.html
inst/doc/Sequence_Retrieval.Rmd
inst/doc/BioMart_Examples.Rmd
inst/doc/Database_Retrieval.html
inst/doc/Sequence_Retrieval.R
inst/doc/Database_Retrieval.Rmd
inst/doc/MetaGenome_Retrieval.R
inst/doc/Functional_Annotation.R
inst/doc/BioMart_Examples.html
inst/seqs/ortho_lyra_cds.fasta
inst/seqs/ortho_lyra_aa.fasta
inst/seqs/ortho_thal_aa.fasta
build/vignette.rds
tests/testthat.R
tests/testthat/test-getKingdomAssemblySummary.R
tests/testthat/test-is.genome.available.R
tests/testthat/test-getGFF.R
tests/testthat/test-getKingdoms().R
tests/testthat/test-organismBM.R
tests/testthat/test-organismFilters.R
tests/testthat/test-getBioSet.R
tests/testthat/test-getFilters.R
tests/testthat/test-download.database.R
tests/testthat/test-getMarts.R
tests/testthat/test-organismAttributes.R
tests/testthat/test-getAssemblyStats.R
tests/testthat/test-biomart.R
tests/testthat/test-getMetaGenomeAnnotations.R
tests/testthat/test-getAttributes.R
tests/testthat/test-getGenome.R
tests/testthat/test-getDatasets.R
tests/testthat/test-getProteome.R
tests/testthat/test-getCDS.R
tests/testthat/test-getMetaGenomeSummary.R
tests/testthat/test-getRNA.R
tests/testthat/test-getGroups().R
vignettes/MetaGenome_Retrieval.Rmd
vignettes/Functional_Annotation.Rmd
vignettes/Sequence_Retrieval.Rmd
vignettes/BioMart_Examples.Rmd
vignettes/Database_Retrieval.Rmd
man/getRepeatMasker.Rd
man/getENSEMBLInfo.Rd
man/meta.retrieval.all.Rd
man/organismBM.Rd
man/read_rm.Rd
man/organismAttributes.Rd
man/listMetaGenomes.Rd
man/listDatabases.Rd
man/read_proteome.Rd
man/download.database.all.Rd
man/listKingdoms.Rd
man/getProteome.Rd
man/getUniProtInfo.Rd
man/read_genome.Rd
man/check_annotation_biomartr.Rd
man/getDatasets.Rd
man/getMarts.Rd
man/biomartr-package.Rd
man/read_cds.Rd
man/getKingdoms.Rd
man/listGenomes.Rd
man/getSummaryFile.Rd
man/getGenomeSet.Rd
man/getGENOMEREPORT.Rd
man/meta.retrieval.Rd
man/getRNASet.Rd
man/getBioSet.Rd
man/getProteomeSet.Rd
man/getMetaGenomeAnnotations.Rd
man/getBio.Rd
man/getCDS.Rd
man/getENSEMBL.Seq.Rd
man/getCollectionSet.Rd
man/download.database.Rd
man/getAttributes.Rd
man/getENSEMBL.Rd
man/is.genome.available.Rd
man/organismFilters.Rd
man/get.ensembl.info.Rd
man/getGFFSet.Rd
man/getUniProtSTATS.Rd
man/getENSEMBL.gtf.Rd
man/getReleases.Rd
man/refseqOrganisms.Rd
man/ensembl_divisions.Rd
man/listGroups.Rd
man/summary_genome.Rd
man/getGenome.Rd
man/getGTF.Rd
man/getGroups.Rd
man/summary_cds.Rd
man/getMetaGenomeSummary.Rd
man/getAssemblyStats.Rd
man/getRNA.Rd
man/read_assemblystats.Rd
man/getMetaGenomes.Rd
man/getKingdomAssemblySummary.Rd
man/read_rna.Rd
man/getENSEMBLGENOMESInfo.Rd
man/read_gff.Rd
man/getCollection.Rd
man/biomart.Rd
man/getCDSSet.Rd
man/cachedir_set.Rd
man/getGO.Rd
man/getGFF.Rd
man/cachedir.Rd
man/getFilters.Rd
