API for biomartr
Genomic Data Retrieval

Global functions
biomart Man page Source code
biomartr Man page
biomartr-package Man page
clean.str.brackets Source code
connected.to.internet Source code
custom_download Source code
docFile Source code
download.database Man page Source code
download.database.all Man page Source code
existingOrganisms Source code
existingOrganisms_ensembl Source code
exists.ftp.file Source code
get.ensembl.info Source code
get.ensemblgenome.info Source code
getAssemblyStats Man page Source code
getAttributes Man page Source code
getCDS Man page Source code
getDatasets Man page Source code
getENSEMBL.Annotation Source code
getENSEMBL.Seq Source code
getENSEMBL.gtf Source code
getENSEMBLGENOMES.Annotation Source code
getENSEMBLGENOMES.Seq Source code
getENSEMBLGENOMES.gtf Source code
getENSEMBLGENOMESInfo Man page Source code
getENSEMBLInfo Man page Source code
getFilters Man page Source code
getGENOMEREPORT Man page Source code
getGFF Man page Source code
getGO Man page Source code
getGTF Man page Source code
getGenome Man page Source code
getGroups Man page Source code
getKingdomAssemblySummary Man page Source code
getKingdoms Man page Source code
getMarts Man page Source code
getMetaGenomeAnnotations Man page Source code
getMetaGenomeSummary Man page Source code
getMetaGenomes Man page Source code
getProteome Man page Source code
getRNA Man page Source code
getReleases Man page Source code
getRepeatMasker Man page Source code
getSubMarts Source code
getSummaryFile Man page Source code
getTMPFile Source code
is.ensembl.alive Source code
is.ensemblgenomes.alive Source code
is.genome.available Man page Source code
listDatabases Man page Source code
listGenomes Man page Source code
listGroups Man page Source code
listKingdoms Man page Source code
listMetaGenomes Man page Source code
listNCBIDatabases Man page
meta.retrieval Man page Source code
meta.retrieval.all Man page Source code
organismAttributes Man page Source code
organismBM Man page Source code
organismFilters Man page Source code
read_assemblystats Man page Source code
read_cds Man page Source code
read_genome Man page Source code
read_gff Man page Source code
read_md5file Source code
read_proteome Man page Source code
read_rm Man page Source code
read_rna Man page Source code
refseqOrganisms Man page Source code
setTMPFile Source code
test Source code
toupper_first_char Source code
biomartr documentation built on Jan. 3, 2018, 9:17 a.m.