read_assemblystats: Import Genome Assembly Stats File

In biomartr: Genomic Data Retrieval

Import Genome Assembly Stats File

Description

This function reads an organism specific Genome Assembly Stats file that was retrieved with getAssemblyStats.

Usage

read_assemblystats(file, type = "raw")

Arguments

file	a character string specifying the path to the file storing the Genome Assembly Stats file.
type	a tibble object, either type = "raw" to import the entire genome assembly stats file or type = "stats" to import overall statistics including all chromosomes, mitochondria and plastids.

Details

This function takes a string specifying the path to the Genome Assembly Stats file of interest (e.g. the path returned by getAssemblyStats) and imports it.

Author(s)

Hajk-Georg Drost

See Also

getAssemblyStats, read_genome, read_proteome, read_cds, read_gff

biomartr documentation built on May 29, 2024, 11:42 a.m.