View source: R/get.ensembl.info.R
get.ensembl.info | R Documentation |
This function interfaces with the ENSEMBL API (https://rest.ensembl.org/info/species?content-type=application/json) and internally stores the output to use this information for subsequent retrieval function calls.
get.ensembl.info(update = FALSE, division)
update |
logical, default FALSE. If TRUE, force re-download of info. |
division |
the ENSEMBL database (division) for which information shall
be retrieved (available options can be obtained with |
Hajk-Georg Drost
ensembl_divisions
, getKingdomAssemblySummary
, getENSEMBLInfo
## Not run:
# Look at available ENSEMBL division options
ensembl_divisions()
# Retrieve available information for EnsemblVertebrates
example <- get.ensembl.info(division = "EnsemblVertebrates")
example
# Update information file stored in the tempdir() folder.
example_update <- get.ensembl.info(division = "EnsemblVertebrates", update = TRUE)
example_update
## End(Not run)
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