bqtl-internal: Internal BQTL functions

In bqtl: Bayesian QTL Mapping Toolkit

Internal BQTL functions

Description

Internal bqtl functions and objects

Usage

x %equiv% y
 map.dx(lambda, theta, min.lambda)
rhs.bqtl(reg.terms, ana.obj, bqtl.specials, local.covar, scope, 
    expand.specials = NULL, method, ...) 
zero.dup(x,dig=6)
uniq.config(swap.obj)

Arguments

lambda	(2*(recomb fraction-1/2)
theta	recomb fraction
min.lambda	smallest map distance to use
reg.terms	a formula
ana.obj	an analysis.object
bqtl.specials	a vector of acceptable special names
local.covar	a function
scope	vector of strings
expand.specials	logical,whether to use expand.grid on the loci
method	e'g' "F2", "BC!", etc
...	not sure
swap.obj	result of swap
x	numeric vector or matrix
y	numeric vector or matrix
dig	how many significant digits to use

Details

These are not to be called by the user.

bqtl documentation built on Sept. 25, 2024, 1:08 a.m.