map.names: Look up names of markers or loci

In bqtl: Bayesian QTL Mapping Toolkit

Look up names of markers or loci

Description

This is a generic helper function with methods that will return the names of markers or loci.

Usage

map.names(x,...)

Arguments

x	An object that has marker names in it. Methods for objects of the map.frame, analysis.object,bqtl, and bqtl.list class.
...	For class(x)=="analysis.object" or class(x)=="map.frame", arguments chromo and cM can be used as in map.index

Details

When applied to an object of class bqtl

map.names(x, \dots, ana.obj )
  

can be used to specify where to find the data.

Value

A character vector

Author(s)

Charles C. Berry [e-mail]

See Also

map.index, map.location

Examples

data(little.ana.bc)

map.names(little.ana.bc,chromo=1,cM=24)

map.names(little.ana.bc,chromo=c(1,1),cM=c(40,55))

fit <- bqtl( bc.phenotype ~ locus(23,42) , little.ana.bc )

map.names( fit )

bqtl documentation built on Sept. 25, 2024, 1:08 a.m.