little.ana.bc: A simulated dataset

In bqtl: Bayesian QTL Mapping Toolkit

A simulated dataset

Description

A simulation of a BC1 cross of 150 organisms with a genome of around 500 cM consisting of 5 chromosomes. The format is that created by make.analysis.obj

Details

This dataset is built up from several others. The basic data are:

little.bc.pheno

A vector of phenotype data

little.bc.markers

A map.frame of marker data and

little.dx

A data frame with 50 rows and 2 columns that specify the map locations of a simulated set of markers

These are used to construct

little.mf.5

A map.frame with 'pseudo-markers' at least every 5 cM made from

little.mf.5 <- make.map.frame(little.map.frame, nint=marker.fill( little.map.frame, reso=5, TRUE ))

Then phenotype, covariate, and marker data are combined

with little.mf.5

little.bc.pheno

A data.frame with the variable bc.phenotype

little.bc.markers

A data.frame with marker state information

See Also

The examples in make.analysis.obj

bqtl documentation built on Sept. 25, 2024, 1:08 a.m.