summary.bqtl: Summarize bqtl object

In bqtl: Bayesian QTL Mapping Toolkit

Summarize bqtl object

Description

Extract coefficients (and related stats), loglikelihood, and residual standard error of the trait.

Usage

## S3 method for class 'bqtl'
summary(object,...)

Arguments

object	The result of link{bqtl}
...	Currently not used

Value

A list containing

coefficients	Either a vector of regression coefficents, or if object was created via bqtl(...,return.hess=TRUE), then a matrix with coefficients, standard errors, t-statistics, and p-values
loglik	the loglikelihood or log posterior
std.res	The residual standard deviation of the trait
N	The counts of all observations, the number omitted, and the number used in the fit

Author(s)

Charles C. Berry [e-mail]

Examples

data(little.ana.bc)
fit <- bqtl( bc.phenotype~locus(4)*locus(45), little.ana.bc,
return.hess=TRUE )
summary(fit)

bqtl documentation built on Sept. 25, 2024, 1:08 a.m.