API for circlize
Circular Visualization
| Global functions | |
|---|---|
| $.CELL_META | Man page |
| .default.major.by | Source code |
| .get_color | Source code |
| .normalizeGraphicalParam | Source code |
| .normalize_to_mat | Source code |
| .onAttach | Source code |
| .restrict_in | Source code |
| .rotate | Source code |
| CELL_META | Man page |
| Subset.CELL_META | Man page |
| add.sector.meta.data | Source code |
| add.track.meta.data | Source code |
| add_transparency | Man page |
| adjacencyList2Matrix | Man page Source code |
| adjacencyMatrix2List | Man page Source code |
| arc.midpoint | Source code |
| arc.points | Source code |
| are.lines.intersected | Source code |
| arrange_links_evenly | Man page Source code |
| as.degree | Source code |
| as.radian | Source code |
| calc_gap | Man page Source code |
| check.points.position | Source code |
| check.track.position | Source code |
| chordDiagram | Man page Source code |
| chordDiagramFromDataFrame | Man page Source code |
| chordDiagramFromMatrix | Man page Source code |
| circlize | Man page Source code |
| circlize-package | Man page |
| circos.approx | Source code |
| circos.arrow | Man page Source code |
| circos.axis | Man page Source code |
| circos.barplot | Man page Source code |
| circos.boxplot | Man page Source code |
| circos.clear | Man page Source code |
| circos.connect | Man page Source code |
| circos.createPlotRegion | Source code |
| circos.dendrogram | Man page Source code |
| circos.genomicAxis | Man page Source code |
| circos.genomicDensity | Man page Source code |
| circos.genomicHeatmap | Man page Source code |
| circos.genomicIdeogram | Man page Source code |
| circos.genomicInitialize | Man page Source code |
| circos.genomicLabels | Man page Source code |
| circos.genomicLines | Man page Source code |
| circos.genomicLink | Man page Source code |
| circos.genomicPoints | Man page Source code |
| circos.genomicPosTransformLines | Man page Source code |
| circos.genomicRainfall | Man page Source code |
| circos.genomicRect | Man page Source code |
| circos.genomicText | Man page Source code |
| circos.genomicTrack | Man page Source code |
| circos.genomicTrackPlotRegion | Man page Source code |
| circos.heatmap | Man page Source code |
| circos.heatmap.format.input | Source code |
| circos.heatmap.initialize | Man page Source code |
| circos.heatmap.link | Man page Source code |
| circos.heatmap.validate | Source code |
| circos.info | Man page Source code |
| circos.initialize | Man page Source code |
| circos.initializeCircularGenome | Man page Source code |
| circos.initializeWithIdeogram | Man page Source code |
| circos.labels | Man page Source code |
| circos.lines | Man page Source code |
| circos.link | Man page Source code |
| circos.nested | Man page Source code |
| circos.par | Man page Source code |
| circos.points | Man page Source code |
| circos.polygon | Man page Source code |
| circos.raster | Man page Source code |
| circos.rect | Man page Source code |
| circos.segments | Man page Source code |
| circos.text | Man page Source code |
| circos.track | Man page Source code |
| circos.trackHist | Man page Source code |
| circos.trackLines | Man page Source code |
| circos.trackPlotRegion | Man page Source code |
| circos.trackPoints | Man page Source code |
| circos.trackText | Man page Source code |
| circos.triangle | Man page Source code |
| circos.update | Man page Source code |
| circos.updatePlotRegion | Man page Source code |
| circos.violin | Man page Source code |
| circos.xaxis | Man page Source code |
| circos.yaxis | Man page Source code |
| cm_h | Man page Source code |
| cm_x | Man page Source code |
| cm_y | Man page Source code |
| col2value | Man page Source code |
| colorRamp2 | Man page Source code |
| continuousIndexSegment | Source code |
| convert_h_from_canvas_to_data | Source code |
| convert_height | Man page Source code |
| convert_length | Man page Source code |
| convert_unit_in_canvas_coordinate | Source code |
| convert_unit_in_data_coordinate | Source code |
| convert_x | Man page Source code |
| convert_y | Man page Source code |
| cut_into_k_dendrograms | Source code |
| cytoband.col | Man page Source code |
| defineColor | Source code |
| degree | Man page Source code |
| degreeDiff2 | Source code |
| draw.sector | Man page Source code |
| empty_env | Source code |
| fontsize | Man page Source code |
| generateRandomBed | Man page Source code |
| genomicDensity | Man page Source code |
| get.all.sector.index | Man page Source code |
| get.all.track.index | Man page Source code |
| get.cell.data | Source code |
| get.cell.meta.data | Man page Source code |
| get.current.chromosome | Man page Source code |
| get.current.sector.index | Man page Source code |
| get.current.track.index | Man page Source code |
| get.sector.data | Source code |
| getColorInfo | Source code |
| getHueRange | Source code |
| getI | Man page Source code |
| getMinimumBrightness | Source code |
| getQuadraticPoints | Source code |
| getSaturationRange | Source code |
| get_bezier_points | Source code |
| get_most_inside_radius | Man page Source code |
| has.cell | Source code |
| highlight.chromosome | Man page Source code |
| highlight.sector | Man page Source code |
| inch_h | Man page Source code |
| inch_x | Man page Source code |
| inch_y | Man page Source code |
| inches_h | Man page Source code |
| inches_x | Man page Source code |
| inches_y | Man page Source code |
| is.circos.heatmap.cached | Source code |
| is.circos.initialized | Source code |
| is.dataFrameList | Source code |
| line_degree | Source code |
| linesWithArrows | Source code |
| lines_expand | Source code |
| loadColorBounds | Source code |
| mat2df | Source code |
| message_wrap | Source code |
| mm_h | Man page Source code |
| mm_x | Man page Source code |
| mm_y | Man page Source code |
| names.CELL_META | Man page Source code |
| normalizeToDataFrame | Source code |
| order_region | Source code |
| overlap_interval | Source code |
| overlap_region | Source code |
| parsePreAllocateTracksValue | Source code |
| parse_unit | Source code |
| pickBrightness | Source code |
| pickHue | Source code |
| pickSaturation | Source code |
| polar2Cartesian | Source code |
| posTransform.default | Man page Source code |
| posTransform.text | Man page Source code |
| print.CELL_META | Man page Source code |
| psubset | Source code |
| quadratic.bezier | Source code |
| quadratic.bezier.length | Source code |
| rainfallTransform | Man page Source code |
| rand_color | Man page Source code |
| randomWithin | Source code |
| read.chromInfo | Man page Source code |
| read.cytoband | Man page Source code |
| recycle.with.factors | Source code |
| recycle.with.levels | Source code |
| reduce_region | Source code |
| resetGlobalVariable | Source code |
| resize_image | Source code |
| revMat | Source code |
| reverse.circlize | Man page Source code |
| roundrect_pos | Source code |
| set.cell.data | Source code |
| set.current.cell | Man page Source code |
| set.current.sector.index | Source code |
| set.current.track.index | Source code |
| set_track_gap | Man page Source code |
| show.index | Man page Source code |
| smartAlign | Man page Source code |
| sort_chr | Source code |
| sort_region | Source code |
| stop_wrap | Source code |
| strwrap2 | Source code |
| uh | Man page Source code |
| usable_chromosomes | Source code |
| ux | Man page Source code |
| uy | Man page Source code |
| validate_data_frame | Source code |
| validate_region | Source code |
| warning_wrap | Source code |
