clean_taxa_names: Rename taxa

In corncob: Count Regression for Correlated Observations with the Beta-Binomial

Rename taxa

Description

Renames taxa to have short human-readable names

Usage

clean_taxa_names(x, name = "OTU")

Arguments

x	Object of class phyloseq
name	Character, defaults to "OTU". Optional. String to use in every taxa name.

Details

The original taxa names are saved as the original_names attribute. See the example for an example of how to access the original names.

Value

Object of class phyloseq, with taxa renamed (defaults to OTU1, OTU2, ...), with the original taxa names saved as an attribute.

Examples

data(soil_phylo)
x <- clean_taxa_names(soil_phylo)
# Use this line to see the original taxa names
attr(x, "original_names")

corncob documentation built on Aug. 31, 2023, 9:06 a.m.