clean_taxa_names: Rename taxa
In corncob: Count Regression for Correlated Observations with the Beta-Binomial
View source: R/clean_taxa_names.R
clean_taxa_names R Documentation
Rename taxa
Description
Renames taxa to have short human-readable names
Usage
clean_taxa_names(x, name = "OTU")
Arguments
x
Object of class phyloseq
name
Character, defaults to "OTU". Optional. String to use in every taxa name.
Details
The original taxa names are saved as the original_names attribute. See the example for an example of how to access the original names.
Value
Object of class phyloseq, with taxa renamed (defaults to OTU1, OTU2, ...), with the original taxa names saved as an attribute.
corncob documentation built on May 29, 2024, 7:15 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
View source: R/clean_taxa_names.R
| clean_taxa_names | R Documentation |
Rename taxa
Description
Renames taxa to have short human-readable names
Usage
clean_taxa_names(x, name = "OTU")
Arguments
x |
Object of class |
name |
Character, defaults to |
Details
The original taxa names are saved as the original_names attribute. See the example for an example of how to access the original names.
Value
Object of class phyloseq, with taxa renamed (defaults to OTU1, OTU2, ...), with the original taxa names saved as an attribute.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.