otu_to_taxonomy: Transform OTUs to their taxonomic label

In corncob: Count Regression for Correlated Observations with the Beta-Binomial

Transform OTUs to their taxonomic label

Description

Transform OTUs to their taxonomic label

Usage

otu_to_taxonomy(OTU, data, level = NULL)

Arguments

OTU	String vector. Names of OTU labels in data
data	phyloseq object with a taxonomy table
level	(Optional). Character vector. Desired taxonomic levels for output.

Value

String vector. Names of taxonomic labels matching labels of OTU.

Examples

data(soil_phylum_small)
da_analysis <- differentialTest(formula = ~ DayAmdmt,
                                phi.formula = ~ DayAmdmt,
                                formula_null = ~ 1,
                                phi.formula_null = ~ DayAmdmt,
                                test = "Wald", boot = FALSE,
                                data = soil_phylum_small,
                                fdr_cutoff = 0.05)
otu_to_taxonomy(OTU = da_analysis$significant_taxa, data = soil_phylum_small,
 level = "Phylum")

corncob documentation built on Aug. 31, 2023, 9:06 a.m.