ibd_phylo_otu: IBD data, OTU count data frame.
In corncob: Count Regression for Correlated Observations with the Beta-Binomial
ibd_phylo_otu R Documentation
IBD data, OTU count data frame.
Description
OTU data frame from a phyloseq object from an IBD microbiome study.
Usage
ibd_phylo_otu
Format
A data frame of OTU counts.
References
Papa, E., Docktor, M., Smillie, C., Weber, S., Preheim, S. P., Gevers, D., Giannoukos, G., Ciulla, D., Tabbaa, D., Ingram, J., Schauer, D. B., Ward, D. V., Korzenik, J. R., Xavier, R. J., Bousvaros, A., Alm, E. J. & Schauer, D. B. (2012). Non-invasive mapping of the gastrointestinal microbiota identifies children with inflammatory bowel disease. PloS One, 7(6), e39242. <doi.org/10.1371/journal.pone.0039242>.
Duvallet, C., Gibbons, S., Gurry, T., Irizarry, R., & Alm, E. (2017). MicrobiomeHD: the human gut microbiome in health and disease [Data set]. Zenodo. <doi.org/10.5281/zenodo.1146764>.
corncob documentation built on May 29, 2024, 7:15 a.m.
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| ibd_phylo_otu | R Documentation |
IBD data, OTU count data frame.
Description
OTU data frame from a phyloseq object from an IBD microbiome study.
Usage
ibd_phylo_otu
Format
A data frame of OTU counts.
References
Papa, E., Docktor, M., Smillie, C., Weber, S., Preheim, S. P., Gevers, D., Giannoukos, G., Ciulla, D., Tabbaa, D., Ingram, J., Schauer, D. B., Ward, D. V., Korzenik, J. R., Xavier, R. J., Bousvaros, A., Alm, E. J. & Schauer, D. B. (2012). Non-invasive mapping of the gastrointestinal microbiota identifies children with inflammatory bowel disease. PloS One, 7(6), e39242. <doi.org/10.1371/journal.pone.0039242>.
Duvallet, C., Gibbons, S., Gurry, T., Irizarry, R., & Alm, E. (2017). MicrobiomeHD: the human gut microbiome in health and disease [Data set]. Zenodo. <doi.org/10.5281/zenodo.1146764>.
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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