convert_phylo: Function to subset and convert phyloseq data

In corncob: Count Regression for Correlated Observations with the Beta-Binomial

Function to subset and convert phyloseq data

Description

Function to subset and convert phyloseq data

Usage

convert_phylo(data, select)

Arguments

data	a phyloseq object
select	Name of OTU or taxa to select, must match taxa name in data

Value

A data.frame object, with elements W as the observed counts, M as the sequencing depth, and the sample data with their original names.

Examples

data(soil_phylo)
convert_phylo(soil_phylo, "OTU.43")

corncob documentation built on Aug. 31, 2023, 9:06 a.m.