Files in corncob
Count Regression for Correlated Observations with the Beta-Binomial
MD5
README.md
NAMESPACE
DESCRIPTION
R/summary_bbdml.R
R/hessian.R
R/score.R
R/sandSE.R
R/HDIbetabinom.R
R/gr_full.R
R/utils-pipe.R
R/getRestrictionTerms.R
R/bbdml.R
R/otu_to_taxonomy.R
R/wald.R
R/soil_phylum_small.R
R/ibd_phylo.R
R/simulate.R
R/plot_differentialTest.R
R/print_bbdml.R
R/genInits.R
R/doBoot.R
R/pbLRT.R
R/pbWald.R
R/lrtest.R
R/differentialTest.R
R/soil_phylo.R
R/qbetabinom.R
R/convert_phylo.R
R/contrastsTest.R
R/print_summary_bbdml.R
R/dbetabin.R
R/checkNested.R
R/print_differentialTest.R
R/objfun.R
R/clean_taxa_names.R
R/plot_bbdml.R
R/corncob.R
R/links.R
inst/doc/corncob-intro.pdf
inst/doc/corncob-intro.pdf.asis
build/vignette.rds
tests/testthat.R
tests/testthat/test_getRestrictionTerms.R
tests/testthat/test_waldtest.R
tests/testthat/test_s3.R
tests/testthat/test_pb.R
tests/testthat/test_links.R
tests/testthat/test_contrastsTest.R
tests/testthat/test_differentialTest.R
tests/testthat/test_qbetabinom.R
tests/testthat/test_objfun.R
tests/testthat/test_bbdml.R
tests/testthat/test_genInits.R
tests/testthat/test_cleantaxanames.R
tests/testthat/test_simulate.R
tests/testthat/test_sandwich.R
tests/testthat/test_scorehessian.R
tests/testthat/test_lrtest.R
vignettes/logo.png
vignettes/corncob-intro.pdf.asis
data/soil_phylum_small.rda
data/soil_phylo.rda
data/ibd_phylo.rda
man/getRestrictionTerms.Rd
man/import_phyloseq.Rd
man/bbdml.Rd
man/print.bbdml.Rd
man/corncob-package.Rd
man/contrastsTest.Rd
man/invfishZ.Rd
man/simulate.bbdml.Rd
man/sandSE.Rd
man/waldchisq.Rd
man/print.summary.bbdml.Rd
man/logit.Rd
man/soil_phylo.Rd
man/pbWald.Rd
man/HDIbetabinom.Rd
man/gr_full.Rd
man/ibd_phylo.Rd
man/invlogit.Rd
man/lrtest.Rd
man/score.Rd
man/qbetabinom.Rd
man/dbetabin.Rd
man/doBoot.Rd
man/genInits.Rd
man/coth.Rd
man/otu_to_taxonomy.Rd
man/plot.differentialTest.Rd
man/checkNested.Rd
man/differentialTest.Rd
man/convert_phylo.Rd
man/waldt.Rd
man/plot.bbdml.Rd
man/pipe.Rd
man/clean_taxa_names.Rd
man/hessian.Rd
man/summary.bbdml.Rd
man/waldchisq_test.Rd
man/dbetabin_neg.Rd
man/pbLRT.Rd
man/soil_phylum_small.Rd
man/fishZ.Rd
man/objfun.Rd
man/print.differentialTest.Rd
