R/soil_phylum_contrasts_otu.R

In corncob: Count Regression for Correlated Observations with the Beta-Binomial

#' Small soil phylum data for contrasts examples, otu table as data frame
#'
#' A small subset of \code{\link{soil_phylo_otu}} used for examples of testing contrasts. A data frame made from the `phyloseq` object with only otu counts.
#'
#' @format A phyloseq-class experiment-level object with an OTU table.
#' \describe{
#' \item{otu_table}{OTU table with 39 taxa and 56 samples}
#' }
#' @references Whitman, T., Pepe-Ranney, C., Enders, A., Koechli, C., Campbell, A.,  Buckley, D. H., Lehmann, J. (2016). \emph{Dynamics of microbial community composi-tion and soil organic carbon mineralization in soil following addition of pyrogenic andfresh organic matter}. The ISME journal, 10(12):2918. <doi: 10.1038/ismej.2016.68>.
"soil_phylum_contrasts_otu"