R/ibd_phylo_taxa.R

In corncob: Count Regression for Correlated Observations with the Beta-Binomial

#' IBD data, taxonomy data frame.
#'
#' Taxonomy data from a phyloseq object from an IBD microbiome study.
#'
#' @format A data frame of taxonomy data.
#' @references Papa, E., Docktor, M., Smillie, C., Weber, S., Preheim, S. P., Gevers, D., Giannoukos, G., Ciulla, D., Tabbaa, D., Ingram, J., Schauer, D. B., Ward, D. V., Korzenik, J. R., Xavier, R. J., Bousvaros, A., Alm, E. J. & Schauer, D. B. (2012). \emph{Non-invasive mapping of the gastrointestinal microbiota identifies children with inflammatory bowel disease}. PloS One, 7(6), e39242. <doi.org/10.1371/journal.pone.0039242>.
#'
#' Duvallet, C., Gibbons, S., Gurry, T., Irizarry, R., & Alm, E. (2017). \emph{MicrobiomeHD: the human gut microbiome in health and disease [Data set]}. Zenodo. <doi.org/10.5281/zenodo.1146764>.
"ibd_phylo_taxa"