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########################################################
# MAIN FUNCTIONS
# Part1: Estimation
# acgm.linkfunction.estim(x,data.X,data.Y,bandwidth,kernel.function=kernel.function.epan)
# Part2: Bandwidth selection under H0
# acgm.bandwidth.selection.linkfunction(data.X.H0,data.Y.H0,linkfunction.H0, kernel.function=kernel.function.epan,verbose=TRUE)
# Part3: Test statistics
# acgm.statistics(data.X,data.Y,linkfunction.H0,bandwidth='optimal',kernel.function=kernel.function.epan,integration.step=0.01 , verbose = TRUE)
# Part4: Bootstrap
# acgm.test.bootstrap(data.X,data.Y,linkfunction.H0,risk,bandwidth='optimal',kernel.function=kernel.function.epan,bootstrap=c(50,'Mammen'),integration.step=0.01,verbose=TRUE)
########################################################
# Part1: estimation
.acgm.rn0=function(x,X,h,kernel.function=kernel.function.epan)
{
n=length(X)
sum(kernel.function((x-X)/h))
}
.acgm.rn1=function(x,X,h,kernel.function=kernel.function.epan)
{
n=length(X)
sum((x-X)*kernel.function((x-X)/h))
}
.acgm.rn2=function(x,X,h,kernel.function=kernel.function.epan)
{
n=length(X)
sum(((x-X)**2)*kernel.function((x-X)/h))
}
.acgm.fn0=function(x,X,Y,h,kernel.function=kernel.function.epan)
{
n=length(X)
sum(Y*kernel.function((x-X)/h))
}
.acgm.fn1=function(x,X,Y,h,kernel.function=kernel.function.epan)
{
n=length(X)
sum(Y*(x-X)*kernel.function((x-X)/h))
}
acgm.linkfunction.estim=function(x,data.X,data.Y,bandwidth,kernel.function=kernel.function.epan)
{
out=rep(0,length(x))
for (i in 1:length(x)){
x0=x[i]
out[i]=(.acgm.rn2(x0,data.X,bandwidth,kernel.function)*.acgm.fn0(x0,data.X,data.Y,bandwidth,kernel.function)-.acgm.rn1(x0,data.X,bandwidth,kernel.function)*.acgm.fn1(x0,data.X,data.Y,bandwidth,kernel.function))/(.acgm.rn0(x0,data.X,bandwidth,kernel.function)*.acgm.rn2(x0,data.X,bandwidth,kernel.function)-.acgm.rn1(x0,data.X,bandwidth,kernel.function)**2)
}
if (sum(is.na(out))>0){print('Warning: NaN in link function estimates')}
out
}
########################################################
# Part2: bandwidth selection under H0
# Fit linkfunction under H0
.acgm.bandwidth.selection.costfunction = function( vec_bandwidth , data.X.H0 , data.Y.H0, linkfunction.H0 , kernel.function=kernel.function.epan)
{
out=1:length(vec_bandwidth)
compteur=0
for (bandwidth in vec_bandwidth)
{
compteur=compteur+1
x=seq( min(data.X.H0)+0.05*(max(data.X.H0)-min(data.X.H0)) , max(data.X.H0)-0.05*(max(data.X.H0)-min(data.X.H0)),length.out=100)
err = sum((acgm.linkfunction.estim(x,data.X.H0,data.Y.H0,bandwidth,kernel.function) - linkfunction.H0(x))^2)
if (is.na(err)){
out[compteur] = Inf
} else {
out[compteur] = err
}
}
out
}
acgm.bandwidth.selection.linkfunction=function(data.X.H0,data.Y.H0,linkfunction.H0, kernel.function=kernel.function.epan,verbose=TRUE)
{
st = sort(data.X.H0,index.return=TRUE)
dat.X.H0=st$x
dat.Y.H0=data.Y.H0[st$ix]
cost=function(bd)
{
.acgm.bandwidth.selection.costfunction(bd,dat.X.H0,dat.Y.H0,linkfunction.H0 , kernel.function)
}
opt = optim(mean(diff(dat.X.H0)),cost,method ="Brent",lower=min(diff(dat.X.H0))/5,upper=max(diff(dat.X.H0))*10)
hopt = opt$par
if (verbose==TRUE)
{
xgrid = seq(min(dat.X.H0),max(dat.X.H0),length.out = 100)
ygrid = acgm.linkfunction.estim(xgrid,dat.X.H0,dat.Y.H0,hopt)
ygrid.th = linkfunction.H0(xgrid)
plot(xgrid,ygrid,type='l',xlab='X',ylab='Y',ylim=c(min(c(ygrid,ygrid.th)),max(c(ygrid,ygrid.th))),main='Fit with optimal bandwidth')
lines(xgrid,ygrid.th,lty=2)
points(dat.X.H0,dat.Y.H0,pch='+',col='gray')
}
hopt
}
########################################################
# Part3: test statistics
acgm.statistics=function(data.X,data.Y,linkfunction.H0,bandwidth='optimal',kernel.function=kernel.function.epan,integration.step=0.01 , verbose = TRUE)
{
if (bandwidth=='optimal')
{
sd_estim = sd( data.Y-linkfunction.H0(data.X) )
data.Y.H0 = linkfunction.H0(data.X)+rnorm(length(data.X),mean=0,sd=sd_estim)
bdw = acgm.bandwidth.selection.linkfunction(data.X,data.Y.H0 ,linkfunction.H0 , kernel.function , verbose )
if (verbose==TRUE)
{
print(paste('Optimal bandwidth under H0:',bdw,sep=' '))
}
} else {
bdw=bandwidth
}
n=length(data.X)
grid=seq(0,1-integration.step,by=integration.step)
error=sum((acgm.linkfunction.estim(grid,data.X,data.Y,bdw,kernel.function)-linkfunction.H0(grid))^2)*integration.step
n*sqrt(bdw)*error
}
########################################################
# Part3: bootstrap
.acgm.resampling=function(data.X,data.Y,bandwidth,kernel.function=kernel.function.epan,bootstrap.type='Mammen')
{
n=length(data.X)
if (bootstrap.type=='Gaussian'){u=rnorm(n,mean=0,sd=1)}
else if (bootstrap.type=='Mammen'){
u=rep(0,n)
for (k in 1:n){
v=runif(1,min=0,max=1)
if (v<(sqrt(5)+1)/(2*sqrt(5))){uu=-(sqrt(5)-1)/2} else {uu=(sqrt(5)+1)/2}
u[k]=uu
}
}
else if (bootstrap.type=='Rademacher'){
u=rep(0,n)
for (k in 1:n){
v=runif(1,min=0,max=1)
if (v<0.5){uu=-1} else {uu=1}
u[k]=uu
}
}
lf=acgm.linkfunction.estim(data.X,data.X,data.Y,bandwidth,kernel.function)
epsilon_hat=data.Y-lf
lf+u*epsilon_hat
}
.acgm.test.stat.bootstrap=function(X,Y,newY,h,kernel.function=kernel.function.epan,integration.step)
{
n=length(X)
grid=seq(0,1-integration.step,by=integration.step)
error=sum((acgm.linkfunction.estim(grid,X,Y,h,kernel.function)-acgm.linkfunction.estim(grid,X,newY,h,kernel.function))^2)*integration.step
n*sqrt(h)*error
}
acgm.test.bootstrap=function(data.X,data.Y,linkfunction.H0,risk,bandwidth='optimal',kernel.function=kernel.function.epan,bootstrap=c(50,'Mammen'),integration.step=0.01,verbose=TRUE)
{
if (bandwidth=='optimal')
{
sd_estim = sd( data.Y-linkfunction.H0(data.X) )
data.Y.H0 = linkfunction.H0(data.X)+rnorm(length(data.X),mean=0,sd=sd_estim)
bdw = acgm.bandwidth.selection.linkfunction(data.X,data.Y.H0 ,linkfunction.H0 , kernel.function , verbose )
if (verbose==TRUE)
{
print(paste('Optimal bandwidth under H0:',bdw,sep=' '))
}
} else {
bdw=bandwidth
}
TnB=rep(0,bootstrap[1])
for (b in 1:bootstrap[1]){
newY=.acgm.resampling(data.X,data.Y,bdw,kernel.function,bootstrap.type=bootstrap[2])
TnB[b]=.acgm.test.stat.bootstrap(data.X,data.Y,newY,bdw,kernel.function,integration.step)
}
if (sum(is.na(TnB))>0){
out = 'NaN in bootstrap test statistics'
pval = 'None'
stattest = 'None'
} else {
threshold=quantile(TnB,1-risk)
stattest=acgm.statistics(data.X,data.Y,linkfunction.H0,bdw,kernel.function,integration.step,verbose=FALSE)
if (is.na(stattest)==TRUE){
out='test statistics is NaN'
pval='None'
} else {
if(stattest<threshold){out='accept H0'} else {out='reject H0'}
pval=sum(TnB>stattest)/length(TnB)
if (pval==0){
pval=paste('<',1/length(TnB),sep=' ')
}
}
}
list('decision'=out,'bandwidth'=bdw,'pvalue'=pval,'test_statistics'=stattest)
}
########################################################
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