prep_get_data_frame: Read data from files/URLs

In dataquieR: Data Quality in Epidemiological Research

Read data from files/URLs

Description

data_frame_name can be a file path or an URL you can append a pipe and a sheet name for Excel files or object name e.g. for RData files. Numbers may also work. All file formats supported by your rio installation will work.

Usage

prep_get_data_frame(
  data_frame_name,
  .data_frame_list = .dataframe_environment,
  keep_types = FALSE
)

Arguments

data_frame_name	character name of the data frame to read, see details
.data_frame_list	environment cache for loaded data frames
keep_types	logical keep types as possibly defined in a file, if the data frame is loaded from one. set TRUE for study data.

Details

The data frames will be cached automatically, you can define an alternative environment for this using the argument .data_frame_list, and you can purge the cache using prep_purge_data_frame_cache.

Use prep_add_data_frames to manually add data frames to the cache, e.g., if you have loaded them from more complex sources, before.

Value

data.frame a data frame

See Also

prep_add_data_frames

prep_load_workbook_like_file

Other data-frame-cache: prep_add_data_frames(), prep_list_dataframes(), prep_load_folder_with_metadata(), prep_load_workbook_like_file(), prep_purge_data_frame_cache()

Examples

## Not run: 
bl <- as.factor(prep_get_data_frame(
  paste0("https://www.rki.de/DE/Content/InfAZ/N/Neuartiges_Coronavirus",
    "/Projekte_RKI/COVID-19_Todesfaelle.xlsx?__blob=",
    "publicationFile|COVID_Todesfälle_BL|Bundesland"))[[1]])

n <- as.numeric(prep_get_data_frame(paste0(
  "https://www.rki.de/DE/Content/InfAZ/N/Neuartiges_Coronavirus/",
  "Projekte_RKI/COVID-19_Todesfaelle.xlsx?__blob=",
  "publicationFile|COVID_Todesfälle_BL|Anzahl verstorbene",
  " COVID-19 Fälle"))[[1]])
plot(bl, n)
# Working names would be to date (2022-10-21), e.g.:
#
# https://www.rki.de/DE/Content/InfAZ/N/Neuartiges_Coronavirus/ \
#    Projekte_RKI/COVID-19_Todesfaelle.xlsx?__blob=publicationFile
# https://www.rki.de/DE/Content/InfAZ/N/Neuartiges_Coronavirus/  \
#    Projekte_RKI/COVID-19_Todesfaelle.xlsx?__blob=publicationFile|2
# https://www.rki.de/DE/Content/InfAZ/N/Neuartiges_Coronavirus/ \
#    Projekte_RKI/COVID-19_Todesfaelle.xlsx?__blob=publicationFile|name
# study_data
# ship
# meta_data
# ship_meta
#
prep_get_data_frame("meta_data | meta_data")
prep_get_data_frame(file.path(system.file(package = "dataquieR"),
  "extdata", "meta_data.RData"))
prep_get_data_frame(file.path(system.file(package = "dataquieR"),
  "extdata", "meta_data.RData|meta_data"))

## End(Not run)

dataquieR documentation built on May 29, 2024, 7:18 a.m.