| add_numbers_above_the_bars |
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| assign_link_operator_value_to_equation |
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| biomarker_mcc_analysis |
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| biomarker_synergy_analysis |
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| biomarker_tp_analysis |
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| calculate_mcc |
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| calculate_models_mcc |
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| calculate_models_synergies_fn |
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| calculate_models_synergies_fp |
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| calculate_models_synergies_tn |
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| calculate_models_synergies_tp |
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| construct_network |
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| count_models_that_predict_synergies |
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| emba |
Man page
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| filter_network |
Man page
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| get_alt_drugname |
Man page
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| get_avg_activity_diff_based_on_mcc_clustering |
Man page
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| get_avg_activity_diff_based_on_specific_synergy_prediction |
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| get_avg_activity_diff_based_on_synergy_set_cmp |
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| get_avg_activity_diff_based_on_tp_predictions |
Man page
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| get_avg_activity_diff_mat_based_on_mcc_clustering |
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| get_avg_activity_diff_mat_based_on_specific_synergy_prediction |
Man page
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| get_avg_activity_diff_mat_based_on_tp_predictions |
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| get_avg_link_operator_diff_based_on_synergy_set_cmp |
Man page
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| get_avg_link_operator_diff_mat_based_on_mcc_clustering |
Man page
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| get_avg_link_operator_diff_mat_based_on_specific_synergy_predict |
Man page
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| get_avg_link_operator_diff_mat_based_on_tp_predictions |
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| get_biomarkers |
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| get_biomarkers_per_type |
Man page
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| get_edges_from_topology_file |
Man page
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| get_fitness_from_models_dir |
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| get_link_operators_from_models_dir |
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| get_model_names |
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| get_model_predictions |
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| get_models_based_on_mcc_class_id |
Man page
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| get_neighbors |
Man page
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| get_node_colors |
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| get_node_names |
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| get_observed_model_predictions |
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| get_observed_synergies |
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| get_observed_synergies_per_cell_line |
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| get_perf_biomarkers_per_cell_line |
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| get_stable_state_from_models_dir |
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| get_synergy_biomarkers_from_dir |
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| get_synergy_biomarkers_per_cell_line |
Man page
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| get_synergy_comparison_sets |
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| get_synergy_scores |
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| get_synergy_subset_stats |
Man page
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| get_unobserved_model_predictions |
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| get_vector_diff |
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| get_x_axis_values |
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| is_comb_element_of |
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| make_barplot_on_models_stats |
Man page
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| make_barplot_on_synergy_subset_stats |
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| plot_avg_link_operator_diff_graph |
Man page
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| plot_avg_link_operator_diff_graphs |
Man page
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| plot_avg_state_diff_graph |
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| plot_avg_state_diff_graph_vis |
Man page
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| plot_avg_state_diff_graphs |
Man page
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| plot_mcc_classes_hist |
Man page
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| print_biomarkers_per_predicted_synergy |
Man page
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| print_model_and_drug_stats |
Man page
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| update_biomarker_files |
Man page
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| validate_observed_synergies_data |
Man page
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|
