API for fitPoly
Genotype Calling for Bi-Allelic Marker Assays
| Global functions | |
|---|---|
| ClusterInit | Source code |
| CodomMarker | Man page Source code |
| EMGaussExp | Source code |
| EMGaussExp.vectorized | Source code |
| EMGaussMax | Source code |
| EMGaussMix | Source code |
| EMMax.mu | Source code |
| EMMax.mu.ratiodist | Source code |
| EMMax.p | Source code |
| EMMax.p.HW | Source code |
| EMMax.sd | Source code |
| EMMax.sd.const | Source code |
| EMMax.sd.free | Source code |
| F1Dosages2Matrix | Man page Source code |
| MarkerResult | Source code |
| PlotHistDensity | Source code |
| XY_plot | Man page Source code |
| XYdat | Man page |
| addErrorProb | Source code |
| allDevOff | Source code |
| calc.R.threshold | Source code |
| calcMus | Source code |
| calcPotShifts | Source code |
| calcRstats | Man page Source code |
| calcScores | Source code |
| calcSegtypeInfo | Man page Source code |
| calcSelcrit | Source code |
| calc_q1 | Source code |
| calc_q2 | Source code |
| calc_q3 | Source code |
| calc_qall | Source code |
| check.filename | Source code Source code |
| check.sampletable | Source code |
| checkCodomMarkerData | Source code |
| checkF1 | Man page Source code |
| checkFilePrefix | Source code |
| checkFilename | Man page Source code |
| checkInputData | Source code |
| checkPlot | Source code |
| checkPlotType | Source code |
| checkSamplePriors | Source code |
| checkSelect | Source code |
| checkSelfing | Source code |
| checkStartmeans | Source code |
| chk2integer | Source code |
| combineFiles | Man page Source code |
| combineModelBatches | Source code |
| combineScoreBatches | Source code |
| compareProbes | Man page Source code |
| concatbatch | Man page Source code |
| convertStartmeans | Man page Source code |
| correctDosages | Man page Source code |
| digamfrq | Source code |
| dnormasr | Source code |
| drawCompositePlot | Source code |
| drawFittedPlot | Source code |
| drawRejectedPlot | Source code |
| drawXYplots | Man page Source code |
| errorplot | Source code |
| expandUnknownParents | Man page Source code |
| find.dips.populations | Source code |
| fitMarkers | Man page Source code |
| fitOneDist | Source code |
| fitOneMarker | Man page |
| fitPoly | Man page |
| fitPoly-package | Man page |
| fitPolyTools | Man page |
| fitPoly_data | Man page |
| gcd | Source code |
| gcd_all | Source code |
| get.genocol | Man page Source code |
| get.genocol.old | Source code |
| get.pHW | Source code |
| get.ps | Source code |
| getAllModelNames | Source code |
| getBatchFiles | Man page Source code |
| getBatchsize | Source code |
| getConsensusGeno | Source code |
| getIntendedSamples | Source code |
| getMarkerPopstruct | Source code |
| getMatchParents | Source code |
| getModelFromFile | Source code |
| getModelPopstruct | Source code |
| getMuModelInfo | Source code |
| getMuModelName | Source code |
| getMuModelNpar | Source code |
| getMutype | Source code |
| getOrigPopstruct | Source code |
| getPargeno | Source code |
| getPolysomicSegr | Source code |
| getPriorCombinations | Source code |
| getResultnames | Source code |
| getSortedLevels | Source code |
| is1NA | Source code |
| isPedigreeSorted | Source code |
| leftstr | Man page Source code |
| lengthNoNA | Source code |
| linterpol | Source code |
| listSegtypes | Man page Source code |
| loglikf | Source code |
| makeCombscoresDf | Source code |
| makeFitPolyFiles | Man page Source code |
| makeModelsDF | Source code |
| makeProgeny | Source code |
| makeScoresDF | Source code |
| makeprobs | Source code |
| orderpsi | Source code |
| padded | Source code Source code |
| polygamfrq | Source code |
| processBatch | Source code |
| readAxiomSummary | Man page Source code |
| readDatfile | Man page Source code |
| readFullDataTable | Man page Source code |
| removeNArows | Source code |
| removeRedundant | Man page Source code |
| rightstr | Man page Source code |
| samplestats | Man page Source code |
| saveMarkerModels | Man page Source code |
| savePlot | Source code |
| savePlotall | Source code |
| savedata | Source code |
| scores | Man page |
| scores2wide | Man page Source code |
| scr.info | Source code |
| segtypeInfoSummary | Man page Source code |
| selMarkers_byR | Man page Source code |
| selMarkers_qall | Man page Source code |
| selSegtypeInfo | Man page Source code |
| shift_mus | Source code |
| shiftdosages | Source code |
| sortPedigree | Source code |
| splitNrenameSamples | Man page Source code |
| startPlot | Source code |
| startPlotall | Source code |
| trim_shf | Source code |
| wide2longAxiom | Source code |
| wide2longGS | Source code |
| wmean | Source code |
| wmean2 | Source code |
| writeDatfile | Man page Source code |
| writeDosagefile | Man page Source code |
