recon_all: Reconstruction from Freesurfer for All Steps

Description Usage Arguments Value Note

View source: R/recon_all.R

Description

Reconstruction from Freesurfer for All Steps

Usage

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recon_all(
  infile = NULL,
  outdir = NULL,
  subjid = NULL,
  verbose = TRUE,
  opts = "-all",
  ...
)

Arguments

infile

Input filename (dcm or nii)

outdir

Output directory

subjid

subject id

verbose

print diagnostic messages

opts

Additional options

...

arguments passed to reconner

Value

Result of system

Note

If you would like to restart a recon-all run, change opts so that opts = "-make all"


freesurfer documentation built on Dec. 9, 2020, 1:07 a.m.