reconner: Reconstruction Helper for recon from Freesurfer

Description Usage Arguments Value Note

View source: R/reconner.R

Description

Wrapper for the recon-all function in Freesurfer

Usage

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reconner(
  infile = NULL,
  outdir = NULL,
  subjid = NULL,
  verbose = TRUE,
  opts = "-all",
  force = FALSE
)

Arguments

infile

Input filename (dcm or nii)

outdir

Output directory

subjid

subject id

verbose

print diagnostic messages

opts

Additional options

force

Force running of the reconstruction

Value

Result of system

Note

If you set infile = NULL, then you can omit the -i flag in recon-all


freesurfer documentation built on Dec. 9, 2020, 1:07 a.m.