reconner: Reconstruction Helper for recon from Freesurfer
In freesurfer: Wrapper Functions for 'Freesurfer'

Wrapper for the recon-all function in Freesurfer

reconner(
  infile = NULL,
  outdir = NULL,
  subjid = NULL,
  verbose = TRUE,
  opts = "-all",
  force = FALSE
)

`infile`	Input filename (dcm or nii)
`outdir`	Output directory
`subjid`	subject id
`verbose`	print diagnostic messages
`opts`	Additional options
`force`	Force running of the reconstruction

Result of system

If you set infile = NULL, then you can omit the -i flag in recon-all

freesurfer documentation built on Dec. 9, 2020, 1:07 a.m.

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README.md Exploring Included Subject Freesurfer Data

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Description