Files in freesurferformats

Read and Write 'FreeSurfer' Neuroimaging File Formats

R/write_fs_label.R R/read_fs_mgh.R R/write_fs_annot.R R/write_fs_patch.R R/read_nisurface.R R/nifti_common.R R/read_fs_volume.R R/mghheader.R R/read_dti_trk.R R/gifti_writer.R R/read_fs_patch.R R/read_fs_transform.R R/read_nifti2.R R/surface_dist.R R/write_fs_surface.R R/read_fs_surface.R R/read_dti_tck.R R/write_nifti1.R R/brainvoyager.R R/write_fs_mgh.R R/cifti.R R/optdata.R R/read_nifti1.R R/write_fs_weight.R R/read_fs_curv.R R/write_nifti2.R R/read_fs_label.R R/rotate3d.R R/helpers.R R/read_fs_weight.R R/nifti_to_mgh.R R/write_fs_curv.R R/read_fs_annot.R R/gifti_xml_tools.R inst/doc/freesurferformats_write.R inst/doc/freesurferformats_header.R inst/doc/freesurferformats_header.Rmd inst/doc/freesurferformats.Rmd inst/doc/freesurferformats.R inst/doc/freesurferformats_write.Rmd tests/testthat.R tests/testthat/test-read_nifti1.R tests/testthat/test-read_nifti2.R tests/testthat/test-gifti_writer.R tests/testthat/test-read_fs_weight.R tests/testthat/test-write_fs_mgh.R tests/testthat/test-read_fs_annot.R tests/testthat/test-write_fs_weight.R tests/testthat/teardown-cran.R tests/testthat/test-read_fs_transform.R tests/testthat/helper-functions-for-tests.R tests/testthat/test-surface_dist.R tests/testthat/test-write_fs_label.R tests/testthat/test-read_nisurface.R tests/testthat/test-rotate3d.R tests/testthat/test-write_fs_surface.R tests/testthat/test-write_fs_annot.R tests/testthat/test-write_fs_patch.R tests/testthat/test-write_nifti1.R tests/testthat/test-nifti_to_mgh.R tests/testthat/test-mghheader.R tests/testthat/test-mgh2nii.R tests/testthat/test-read_fs_patch.R tests/testthat/test-read_fs_surface.R tests/testthat/test-helpers.R tests/testthat/test-read_fs_mgh.R tests/testthat/test-read_fs_label.R tests/testthat/test-write_nifti2.R tests/testthat/test-gifti_xml_tools.R tests/testthat/test-brainvoyager.R tests/testthat/test-write_fs_curv.R tests/testthat/test-read_fs_curv.R tests/testthat/test-cifti.R vignettes/freesurferformats_header.Rmd vignettes/freesurferformats.Rmd vignettes/freesurferformats_write.Rmd man/write.nifti1.Rd man/read.nifti1.header.Rd man/read.fs.surface.Rd man/polygon.soup.to.indexed.mesh.Rd man/read.fs.morph.asc.Rd man/ni1header.for.data.Rd man/write.nifti2.Rd man/sm0to1.Rd man/giftixml_add_labeltable_posneg.Rd man/mghheader.is.ras.valid.Rd man/write.fs.morph.ni2.Rd man/is.bvsmp.Rd man/read.smp.brainvoyager.Rd man/read.fs.annot.gii.Rd man/nifti.file.uses.fshack.Rd man/read.fs.morph.txt.Rd man/doapply.transform.mtx.Rd man/read.fs.surface.off.Rd man/xml_node_gifti_label.Rd man/xml_node_gifti_label_table_from_annot.Rd man/vertex.euclid.dist.Rd man/nifti.datadim.from.dimfield.Rd man/read.fs.surface.byu.Rd man/write.fs.morph.smp.Rd man/rotate2D.Rd man/check.dtype.for.data.Rd man/write.fs.morph.gii.Rd man/ply.header.lines.Rd man/read.dti.tck.Rd man/mghheader.crs.orientation.Rd man/write.smp.brainvoyager.v3or4or5.Rd man/read.nifti1.data.Rd man/closest.vert.to.point.Rd man/sm1to0.Rd man/write.fs.surface.asc.Rd man/mghheader.scanner2tkreg.Rd man/read.fs.transform.lta.Rd man/colortable.from.annot.Rd man/xml_node_gifti_label_table.Rd man/read.fs.morph.bvsmp.Rd man/mghheader.ras2vox.Rd man/write.smp.brainvoyager.Rd man/ni2header.for.data.Rd man/print.fs.label.Rd man/read_nisurfacefile.fsnative.Rd man/parse.stl.ascii.face.Rd man/read.fs.morph.cifti.Rd man/mghheader.ras2vox.tkreg.Rd man/write.fs.surface.vtk.Rd man/write.fs.morph.asc.Rd man/read.fs.surface.ico.Rd man/read.fs.annot.Rd man/read.fs.colortable.Rd man/write.fs.surface.Rd man/mri_dtype_numbytes.Rd man/euclidian.dist.Rd man/read.fs.volume.nii.Rd man/surfaceras.to.talairach.Rd man/read_nisurfacefile.Rd man/assert.surface.Rd man/fileopen.gz.or.not.Rd man/nifti.file.version.Rd man/read.element.counts.ply.header.Rd man/annot.unique.Rd man/read.fs.surface.geo.Rd man/read.fs.surface.bvsrf.Rd man/read_nisurface.Rd man/mni152reg.Rd man/adjust.face.indices.to.Rd man/read.fs.surface.ply.Rd man/check_data_and_settings_consistency.Rd man/fread3.Rd man/write.fs.surface.bvsrf.Rd man/get.slice.orientation.Rd man/guess.filename.is.gzipped.Rd man/read.fs.surface.mz3.Rd man/print.fs.patch.Rd man/is.mghheader.Rd man/read.fs.morph.gii.Rd man/read.fs.transform.xfm.Rd man/ras.to.surfaceras.Rd man/read.fs.surface.asc.Rd man/write.fs.weight.Rd man/write.fs.label.Rd man/bvsmp.Rd man/read.fs.surface.vtk.Rd man/readcolortable_oldformat.Rd man/nifti.time.info.Rd man/read.fs.morph.ni1.Rd man/read.fs.weight.Rd man/read.fixed.char.binary.Rd man/ni1header.template.Rd man/readable.files.Rd man/delete_all_opt_data.Rd man/gifti_xml_write.Rd man/fs.get.morph.file.format.from.filename.Rd man/mghheader.primary.slice.direction.Rd man/rotate3D.Rd man/surfaceras.to.ras.Rd man/read.fs.patch.Rd man/write.fs.morph.txt.Rd man/gifti_writer.Rd man/mghheader.is.conformed.Rd man/write.smp.brainvoyager.v2.Rd man/nifti.header.check.Rd man/read.fs.surface.stl.ascii.Rd man/xml_node_gifti_coordtransform.Rd man/read.fs.volume.Rd man/fs.get.morph.file.ext.for.format.Rd man/read.fs.transform.dat.Rd man/has_pandoc.Rd man/write.fs.curv.Rd man/read.fs.weight.asc.Rd man/scann.Rd man/is.fs.annot.Rd man/coord.to.key.Rd man/linesplit.fixed.Rd man/write.fs.surface.ply2.Rd man/write.fs.surface.off.Rd man/read.fs.mgh.Rd man/int.to.col.brainvoyager.Rd man/nifti.datadim.to.dimfield.Rd man/read.nifti2.data.Rd man/read.fs.label.Rd man/read.fs.curv.Rd man/write.fs.surface.off.ply2.Rd man/gifti_xml_add_global_metadata.Rd man/read.fs.transform.Rd man/mghheader.vox2ras.tkreg.Rd man/write.fs.surface.ply.Rd man/write.fs.morph.ni1.Rd man/is.fs.label.Rd man/write.fs.surface.byu.Rd man/read.fs.patch.asc.Rd man/read.mesh.brainvoyager.Rd man/read.fs.surface.obj.Rd man/read_nisurfacefile.gifti.Rd man/read.dti.trk.Rd man/vertexdists.to.point.Rd man/download_opt_data.Rd man/ras.to.talairachras.Rd man/read.nifti2.header.internal.Rd man/nifti.dtype.info.Rd man/flip3D.Rd man/read.fs.label.gii.Rd man/is.fs.surface.Rd man/filepath.ends.with.Rd man/parse.transform.matrix.lines.Rd man/mgh.is.conformed.Rd man/nifti.transform.type.name.Rd man/giftixml_add_labeltable_from_annot.Rd man/write.fs.annot.gii.Rd man/read.smp.brainvoyager.v1or2.Rd man/write.fs.surface.obj.Rd man/print.fs.volume.Rd man/fixed.vec.format.int.Rd man/read.smp.brainvoyager.v4or5.Rd man/read.fs.surface.stl.Rd man/gifti_xml.Rd man/read.nifti1.header.internal.Rd man/translate.mri.dtype.Rd man/stl.format.file.is.ascii.Rd man/mghheader.tkreg2scanner.Rd man/read.fs.label.native.Rd man/mghheader.centervoxelRAS.from.firstvoxelRAS.Rd man/read.fs.morph.Rd man/get.dti.trk.endianness.Rd man/write.fs.patch.Rd man/write.fs.surface.mz3.Rd man/nifti.space.info.Rd man/read.fs.morph.ni2.Rd man/read.dti.tsf.Rd man/read.fs.gca.Rd man/read.fs.surface.stl.bin.Rd man/rotate90.Rd man/fs.patch.Rd man/xml_node_gifti_MD.Rd man/readcolortable.Rd man/write.fs.colortable.Rd man/get_opt_data_filepath.Rd man/read.fs.surface.gii.Rd man/write.fs.annot.Rd man/faces.quad.to.tris.Rd man/faces.tris.to.quad.Rd man/fwrite3.Rd man/read.nifti2.header.Rd man/cdata.Rd man/read_nisurfacefile.fsascii.Rd man/ni2header.template.Rd man/annot.max.region.idx.Rd man/write.fs.morph.Rd man/write.fs.weight.asc.Rd man/talairachras.to.ras.Rd man/nifti.field.check.length.Rd man/fs.surface.to.tmesh3d.Rd man/print.fs.annot.Rd man/list_opt_data.Rd man/write.fs.label.gii.Rd man/mghheader.update.from.vox2ras.Rd man/mghheader.vox2ras.Rd man/mghheader.vox2vox.Rd man/read.smp.brainvoyager.v3.Rd man/nifti.field.check.nchar.max.Rd man/write.fs.mgh.Rd man/is.fs.volume.Rd man/print.fs.surface.Rd man/write.fs.surface.gii.Rd man/flip2D.Rd man/mghheader.Rd man/read.fs.morph.nii.Rd