tetcor: Compute ML Tetrachoric Correlations

In fungible: Psychometric Functions from the Waller Lab

Compute ML Tetrachoric Correlations

Description

Compute ML tetrachoric correlations with optional bias correction and smoothing.

Usage

tetcor(
  X,
  y = NULL,
  BiasCorrect = TRUE,
  stderror = FALSE,
  Smooth = TRUE,
  max.iter = 5000,
  PRINT = TRUE
)

Arguments

X	Either a matrix or vector of (0/1) binary data.
y	An optional(if X is a matrix) vector of (0/1) binary data.
BiasCorrect	A logical that determines whether bias correction (Brown & Benedetti, 1977) is performed. Default = TRUE.
stderror	A logical that determines whether standard errors are calulated. Default = FALSE.
Smooth	A logical which determines whether the tetrachoric correlation matrix should be smoothed. A smoothed matrix is always positive definite.
max.iter	Maximum number of iterations. Default = 50.
PRINT	A logical that determines whether to print progress updates during calculations. Default = TRUE

Value

If stderror = FALSE, tetcor returns a matrix of tetrachoric correlations. If stderror = TRUE then tetcor returns a list the first component of which is a matrix of tetrachoric correlations and the second component is a matrix of standard errors (see Hamdan, 1970).

r	The tetrachoric correlation matrix

.

se	A matrix of standard errors.
convergence	(logical) The convergence status of the algorithm. A value of TRUE denotes that the algorithm converged. A value of FALSE denotes that the algorithm did not converge and the returned correlations are Pearson product moments.
Warnings	A list of warnings.

Author(s)

Niels Waller

References

Brown, M. B. & Benedetti, J. K. (1977). On the mean and variance of the tetrachoric correlation coefficient. Psychometrika, 42, 347–355.

Divgi, D. R. (1979) Calculation of the tetrachoric correlation coefficient. Psychometrika, 44, 169-172.

Hamdan, M. A. (1970). The equivalence of tetrachoric and maximum likelihood estimates of rho in 2 by 2 tables. Biometrika, 57, 212-215.

Examples

## generate bivariate normal data
library(MASS)
set.seed(123)
rho <- .85
xy <- mvrnorm(100000, mu = c(0,0), Sigma = matrix(c(1, rho, rho, 1), ncol = 2))

# dichotomize at difficulty values
p1 <- .7
p2 <- .1
xy[,1] <- xy[,1] < qnorm(p1) 
xy[,2] <- xy[,2] < qnorm(p2)

print( apply(xy,2,mean), digits = 2)
#[1] 0.700 0.099

tetcor(X = xy, BiasCorrect = TRUE, 
       stderror = TRUE, Smooth = TRUE, max.iter = 5000)

# $r
# [,1]      [,2]
# [1,] 1.0000000 0.8552535
# [2,] 0.8552535 1.0000000
# 
# $se
# [,1]           [,2]
# [1,] NA         0.01458171
# [2,] 0.01458171 NA
# 
# $Warnings
# list()

fungible documentation built on March 31, 2023, 5:47 p.m.