clone.Galgo: Clones itself and all its objects

In galgo: Genetic Algorithms for Multivariate Statistical Models from Large-Scale Functional Genomics Data

Description

Clone itself and all its objects.

Objects in S3 and this package are passed by reference and any “pointer” to it will affect the original object. You must clone an object in order to conserve the original values.

Usage

## S3 method for class 'Galgo'
clone(.O, ...)

Value

Returns a new cloned object.

Author(s)

Victor Trevino. Francesco Falciani Group. University of Birmingham, U.K. http://www.bip.bham.ac.uk/bioinf

References

Goldberg, David E. 1989 Genetic Algorithms in Search, Optimization and Machine Learning. Addison-Wesley Pub. Co. ISBN: 0201157675

See Also

For more information see Galgo. Object.

Examples

  cr <- Chromosome(genes=newCollection(Gene(shape1=1, shape2=100),5))
  ni <- Niche(chromosomes = newRandomCollection(cr, 10))
  wo <- World(niches=newRandomCollection(ni,2))

  ga <- Galgo(populations=newRandomCollection(wo,1), goalFitness = 0.75, callBackFunc=plot,
              fitnessFunc=function(chr, parent) 5/sd(as.numeric(chr)))
  ga
  ga2 <- clone(ga)
  evolve(ga)
  evolve(ga2)
  ga3 <- clone(ga)
  evolve(ga3) # really nothing, everything already done

galgo documentation built on May 2, 2019, 4:20 a.m.