API for galgo
Genetic Algorithms for Multivariate Statistical Models from Large-Scale Functional Genomics Data

Global functions
ALL Man page
ALL.classes Man page
Bag Man page
Bag.length Man page
Bag.print Man page
Bag.summary Man page
BigBang Man page
BigBang.activeChromosomeSet Man page
BigBang.addCount Man page
BigBang.addRandomSolutions Man page
BigBang.addSolutions Man page
BigBang.as.matrix Man page
BigBang.assignParallelFile Man page
BigBang.blast Man page
BigBang.buildCount Man page
BigBang.classPredictionMatrix Man page
BigBang.computeCount Man page
BigBang.confusionMatrix Man page
BigBang.distanceImportanceNetwork Man page
BigBang.filterSolution Man page
BigBang.fitnessSplits Man page
BigBang.formatChromosome Man page
BigBang.forwardSelectionModels Man page
BigBang.geneCoverage Man page
BigBang.geneFrequency Man page
BigBang.geneImportanceNetwork Man page
BigBang.geneRankStability Man page
BigBang.getFrequencies Man page
BigBang.heatmapModels Man page
BigBang.loadParallelFiles Man page
BigBang.meanFitness Man page
BigBang.meanGeneration Man page
BigBang.mergeBangs Man page
BigBang.pcaModels Man page
BigBang.plot Man page
BigBang.predict Man page
BigBang.print Man page
BigBang.saveObject Man page
BigBang.sensitivityClass Man page
BigBang.specificityClass Man page
BigBang.summary Man page
Chromosome Man page
Chromosome.as.double Man page
Chromosome.clone Man page
Chromosome.decode Man page
Chromosome.generateRandom Man page
Chromosome.genes Man page
Chromosome.length Man page
Chromosome.mutate Man page
Chromosome.newCollection Man page
Chromosome.newRandomCollection Man page
Chromosome.print Man page
Chromosome.reInit Man page
Chromosome.summary Man page
Galgo Man page
Galgo.best Man page
Galgo.bestFitness Man page
Galgo.clone Man page
Galgo.evaluate Man page
Galgo.evolve Man page
Galgo.generateRandom Man page
Galgo.length Man page
Galgo.max Man page
Galgo.maxFitness Man page
Galgo.plot Man page
Galgo.print Man page
Galgo.reInit Man page
Galgo.refreshStats Man page
Galgo.summary Man page
Gene Man page
Gene.as.double Man page
Gene.as.matrix Man page
Gene.generateRandom Man page
Gene.mutate Man page
Gene.newCollection Man page
Gene.newRandomCollection Man page
Gene.print Man page
Gene.reInit Man page
Gene.summary Man page
Niche Man page
Niche.as.double Man page
Niche.as.matrix Man page
Niche.best Man page
Niche.bestFitness Man page
Niche.clone Man page
Niche.crossover Man page
Niche.evaluate Man page
Niche.generateRandom Man page
Niche.getFitness Man page
Niche.length Man page
Niche.max Man page
Niche.maxFitness Man page
Niche.mutate Man page
Niche.newCollection Man page
Niche.newRandomCollection Man page
Niche.offspring Man page
Niche.plot Man page
Niche.print Man page
Niche.progeny Man page
Niche.reInit Man page
Niche.refreshStats Man page
Niche.scaling Man page
Niche.summary Man page
World Man page
World.best Man page
World.bestFitness Man page
World.clone Man page
World.evaluate Man page
World.generateRandom Man page
World.length Man page
World.max Man page
World.maxFitness Man page
World.newCollection Man page
World.newRandomCollection Man page
World.plot Man page
World.print Man page
World.progeny Man page
World.reInit Man page
World.refreshStats Man page
World.summary Man page
activeChromosomeSet Man page
activeChromosomeSet,BigBang-method Man page
activeChromosomeSet.BigBang Man page Man page
addCount Man page
addCount,BigBang-method Man page
addCount.BigBang Man page Man page
addRandomSolutions Man page
addRandomSolutions,BigBang-method Man page
addRandomSolutions.BigBang Man page Man page
addSolutions Man page
addSolutions,BigBang-method Man page
addSolutions.BigBang Man page Man page
addVigs2WinMenu Source code
as.double,Chromosome-method Man page
as.double,Gene-method Man page
as.double,Niche-method Man page
as.double.Chromosome Man page Man page
as.double.Gene Man page Man page
as.double.Niche Man page Man page
as.list Man page
as.list.Object Man page
as.matrix,BigBang-method Man page
as.matrix,Gene-method Man page
as.matrix,Niche-method Man page
as.matrix.BigBang Man page Man page
as.matrix.Gene Man page Man page
as.matrix.Niche Man page Man page
assignParallelFile Man page
assignParallelFile,BigBang-method Man page
assignParallelFile.BigBang Man page Man page
best Man page
best,Galgo-method Man page
best,Niche-method Man page
best,World-method Man page
best.Galgo Man page Man page
best.Niche Man page Man page
best.World Man page Man page
bestFitness Man page
bestFitness,Galgo-method Man page
bestFitness,Niche-method Man page
bestFitness,World-method Man page
bestFitness.Galgo Man page Man page
bestFitness.Niche Man page Man page
bestFitness.World Man page Man page
blast Man page
blast,BigBang-method Man page
blast.BigBang Man page Man page
buildCount Man page
buildCount,BigBang-method Man page
buildCount.BigBang Man page Man page
classPrediction Man page Source code
classPredictionMatrix Man page
classPredictionMatrix,BigBang-method Man page
classPredictionMatrix.BigBang Man page Man page
clone Man page
clone,Chromosome-method Man page
clone,Galgo-method Man page
clone,Niche-method Man page
clone,World-method Man page
clone.Chromosome Man page Man page
clone.Galgo Man page Man page
clone.Niche Man page Man page
clone.World Man page Man page
compCount Source code
computeCount Man page
computeCount,BigBang-method Man page
computeCount.BigBang Man page Man page
configBB.VarSel Man page Source code
configBB.VarSelMisc Man page Source code
confusionMatrix Man page
confusionMatrix,BigBang-method Man page
confusionMatrix.BigBang Man page Man page
crossover Man page
crossover,Niche-method Man page
crossover.Niche Man page Man page
decode Man page
decode,Chromosome-method Man page
decode.Chromosome Man page Man page
distanceImportanceNetwork Man page
distanceImportanceNetwork,BigBang-method Man page
distanceImportanceNetwork.BigBang Man page Man page
equalLists Source code
evaluate Man page
evaluate,Galgo-method Man page
evaluate,Niche-method Man page
evaluate,World-method Man page
evaluate.Galgo Man page Man page
evaluate.Niche Man page Man page
evaluate.World Man page Man page
evolve Man page
evolve,Galgo-method Man page
evolve.Galgo Man page Man page
filterSolution Man page
filterSolution,BigBang-method Man page
filterSolution.BigBang Man page Man page
fitness Man page Source code
fitnessSplits Man page
fitnessSplits,BigBang-method Man page
fitnessSplits.BigBang Man page Man page
flush.console Source code
formatChromosome Man page
formatChromosome,BigBang-method Man page
formatChromosome.BigBang Man page Man page
forwardSelectionModels Man page
forwardSelectionModels,BigBang-method Man page
forwardSelectionModels.BigBang Man page Man page
frequncies.by.chance Source code
galgo Man page
galgo-package Man page
galgo.dist Man page Source code
geneBackwardElimination Man page Source code
geneCoverage Man page
geneCoverage,BigBang-method Man page
geneCoverage.BigBang Man page Man page
geneFrequency Man page
geneFrequency,BigBang-method Man page
geneFrequency.BigBang Man page Man page
geneImportanceNetwork Man page
geneImportanceNetwork,BigBang-method Man page
geneImportanceNetwork.BigBang Man page Man page
geneRankStability Man page
geneRankStability,BigBang-method Man page
geneRankStability.BigBang Man page Man page
generateRandom Man page
generateRandom,Chromosome-method Man page
generateRandom,Galgo-method Man page
generateRandom,Gene-method Man page
generateRandom,Niche-method Man page
generateRandom,World-method Man page
generateRandom.Chromosome Man page Man page
generateRandom.Galgo Man page Man page
generateRandom.Gene Man page Man page
generateRandom.Niche Man page Man page
generateRandom.World Man page Man page
generateRandomModels Man page Source code
genes Man page
genes,Chromosome-method Man page
genes.Chromosome Man page Man page
getFitness Man page
getFitness,Niche-method Man page
getFitness.Niche Man page Man page
getFrequencies Man page
getFrequencies,BigBang-method Man page
getFrequencies.BigBang Man page Man page
heatmapModels Man page
heatmapModels,BigBang-method Man page
heatmapModels.BigBang Man page Man page
knn_C_predict Man page Source code
knn_R_predict Man page Source code
length Man page
length,Bag-method Man page
length,Chromosome-method Man page
length,Galgo-method Man page
length,Niche-method Man page
length,World-method Man page
length.Bag Man page Man page
length.Chromosome Man page Man page
length.Galgo Man page Man page
length.Niche Man page Man page
length.World Man page Man page
loadObject Man page Source code
loadParallelFiles Man page
loadParallelFiles,BigBang-method Man page
loadParallelFiles.BigBang Man page Man page
max Man page
max,Galgo-method Man page
max,Niche-method Man page
max,World-method Man page
max.Galgo Man page Man page
max.Niche Man page Man page
max.World Man page Man page
maxFitness Man page
maxFitness,Galgo-method Man page
maxFitness,Niche-method Man page
maxFitness,World-method Man page
maxFitness.Galgo Man page Man page
maxFitness.Niche Man page Man page
maxFitness.World Man page Man page
meanFitness Man page
meanFitness,BigBang-method Man page
meanFitness.BigBang Man page Man page
meanGeneration Man page
meanGeneration,BigBang-method Man page
meanGeneration.BigBang Man page Man page
mergeBangs Man page
mergeBangs,BigBang-method Man page
mergeBangs.BigBang Man page Man page
mlhd_C_predict Man page Source code
mlhd_R_predict Man page Source code
modelSelection Man page Source code
mutate Man page
mutate,Chromosome-method Man page
mutate,Gene-method Man page
mutate,Niche-method Man page
mutate.Chromosome Man page Man page
mutate.Gene Man page Man page
mutate.Niche Man page Man page
nearcent_C_predict Man page Source code
nearcent_R_predict Man page Source code
newCollection Man page
newCollection,Chromosome-method Man page
newCollection,Gene-method Man page
newCollection,Niche-method Man page
newCollection,World-method Man page
newCollection.Chromosome Man page Man page
newCollection.Gene Man page Man page
newCollection.Niche Man page Man page
newCollection.World Man page Man page
newCollection.o Source code
newRandomCollection Man page
newRandomCollection,Chromosome-method Man page
newRandomCollection,Gene-method Man page
newRandomCollection,Niche-method Man page
newRandomCollection,World-method Man page
newRandomCollection.Chromosome Man page Man page
newRandomCollection.Gene Man page Man page
newRandomCollection.Niche Man page Man page
newRandomCollection.World Man page Man page
newRandomCollection.o Source code
nnet_R_predict Man page Source code
offspring Man page
offspring,Niche-method Man page
offspring.Niche Man page Man page
onAttach Source code
onUnload Source code
pad Source code
pcaModels Man page
pcaModels,BigBang-method Man page
pcaModels.BigBang Man page Man page
plot,BigBang-method Man page
plot,Galgo-method Man page
plot,Niche-method Man page
plot,World-method Man page
plot.BigBang Man page Man page
plot.Galgo Man page Man page
plot.Niche Man page Man page
plot.World Man page Man page
plotlabelsbb Source code
predict Man page
predict,BigBang-method Man page
predict.BigBang Man page Man page
print Man page
print,Bag-method Man page
print,BigBang-method Man page
print,Chromosome-method Man page
print,Galgo-method Man page
print,Gene-method Man page
print,Niche-method Man page
print,World-method Man page
print.Bag Man page Man page
print.BigBang Man page Man page
print.Chromosome Man page Man page
print.Galgo Man page Man page
print.Gene Man page Man page
print.Niche Man page Man page
print.World Man page Man page
progeny Man page
progeny,Niche-method Man page
progeny,World-method Man page
progeny.Niche Man page Man page
progeny.World Man page Man page
randomforest_R_predict Man page Source code
reInit Man page
reInit,Chromosome-method Man page
reInit,Galgo-method Man page
reInit,Gene-method Man page
reInit,Niche-method Man page
reInit,World-method Man page
reInit.Chromosome Man page Man page
reInit.Galgo Man page Man page
reInit.Gene Man page Man page
reInit.Niche Man page Man page
reInit.World Man page Man page
reObject Man page Source code
recursive.sorting.bb Source code
refreshStats Man page
refreshStats,Galgo-method Man page
refreshStats,Niche-method Man page
refreshStats,World-method Man page
refreshStats.Galgo Man page Man page
refreshStats.Niche Man page Man page
refreshStats.World Man page Man page
restoreCount Source code
robustGeneBackwardElimination Man page Source code
rpart_R_predict Man page Source code
runifInt Man page Source code
saveCount Source code
saveObject Man page
saveObject,BigBang-method Man page
saveObject.BigBang Man page Man page
scaling Man page
scaling,Niche-method Man page
scaling.Niche Man page Man page
secondsToTime Source code
secondsToTimeString Source code
sensitivityClass Man page
sensitivityClass,BigBang-method Man page
sensitivityClass.BigBang Man page Man page
specificityClass Man page
specificityClass,BigBang-method Man page
specificityClass.BigBang Man page Man page
summary Man page
summary,Bag-method Man page
summary,BigBang-method Man page
summary,Chromosome-method Man page
summary,Galgo-method Man page
summary,Gene-method Man page
summary,Niche-method Man page
summary,World-method Man page
summary.Bag Man page Man page
summary.BigBang Man page Man page
summary.Chromosome Man page Man page
summary.Galgo Man page Man page
summary.Gene Man page Man page
summary.Niche Man page Man page
summary.World Man page Man page
svm_C_predict Man page Source code
svm_R_predict Man page Source code
unObject Man page
unObject.Object Man page
unObject.list Man page
galgo documentation built on Oct. 14, 2018, 5:04 p.m.