generateRandom.Galgo: Generates random values for all populations in the Galgo...

In galgo: Genetic Algorithms for Multivariate Statistical Models from Large-Scale Functional Genomics Data

Description

Generates random values for all populations in the Galgo object. It only pass the message generateRandom to all its populations.

Usage

## S3 method for class 'Galgo'
generateRandom(.O, ...)

Value

Returns nothing.

Author(s)

Victor Trevino. Francesco Falciani Group. University of Birmingham, U.K. http://www.bip.bham.ac.uk/bioinf

References

Goldberg, David E. 1989 Genetic Algorithms in Search, Optimization and Machine Learning. Addison-Wesley Pub. Co. ISBN: 0201157675

See Also

For more information see Galgo. unObject, as.list.Object, newCollection.Chromosome, newRandomCollection.World.

Examples

  cr <- Chromosome(genes=newCollection(Gene(shape1=1, shape2=100),5))
  ni <- Niche(chromosomes = newRandomCollection(cr, 10))
  wo <- World(niches=newRandomCollection(ni,2))

  ga <- Galgo(populations=newRandomCollection(wo,1), goalFitness = 0.75,
              callBackFunc=plot,
              fitnessFunc=function(chr, parent) 5/sd(as.numeric(chr)))
  ga
  evolve(ga)
  evolve(ga)  ## nothing
  reInit(ga)
  generateRandom(ga)
  evolve(ga)  ## here we go again

galgo documentation built on May 2, 2019, 4:20 a.m.