progeny.World: Calls progeny method to all niches in the world object

In galgo: Genetic Algorithms for Multivariate Statistical Models from Large-Scale Functional Genomics Data

Description

Calls progeny method to all niches in the world object.

Usage

## S3 method for class 'World'
progeny(.O, immigration=NULL, ...)

Arguments

immigration

Chromosomes wanted to immigrate (replacing) in the niche.

Value

Returns nothing.

Author(s)

Victor Trevino. Francesco Falciani Group. University of Birmingham, U.K. http://www.bip.bham.ac.uk/bioinf

References

Goldberg, David E. 1989 Genetic Algorithms in Search, Optimization and Machine Learning. Addison-Wesley Pub. Co. ISBN: 0201157675

See Also

For more information see World. Niche, progeny.Niche(), offspring.Niche().

Examples

  cr <- Chromosome(genes=newCollection(Gene(shape1=1, shape2=100),5))
  ni <- Niche(chromosomes=newRandomCollection(cr, 10))
  ni$fitness <- runif(10)  ## tricky fitness
  refreshStats(ni)
  ni
  wo <- World(niches=newRandomCollection(ni,2))
  wo$niches[[1]]$fitness <- runif(10)
  wo$niches[[2]]$fitness <- runif(10)
  refreshStats(wo)
  wo
  summary(wo)
  progeny(wo)
  wo
  summary(wo)
  progeny(wo,2)
  wo
  summary(wo)

galgo documentation built on May 2, 2019, 4:20 a.m.