asBCdat | Data Type Conversion |
BC_dat | Barcode distribution of an example experiment. |
BCdat-class | BCdat class. |
BC_dat_EC | Barcode distribution of an example experiment. |
com_pair | Compairing two BCdat Objects |
createGDF | Creating a gdf File |
dot-createPatternFile | Internal function |
dot-generateColors | Color list generation |
dot-getBarcodeFilter | Internal function |
dot-getDiagonalIndex | Index Generation |
dot-getMinDist | Distance calculation |
dot-getWobblePos | getWobblePos |
dot-hex2rgbColor | Converts hex colors into gephi usable rgb colors |
dot-revComp | DNA string manipulation |
dot-revComp_EqLength | DNA string manipulation for equal string sizes |
dot-revComp_UneqLength | DNA string manipulation for unequal string sizes |
dot-testDirIdentifier | Internal function |
errorCorrection | Error Correction |
error_correction_circlePlot | Circle Plot |
error_correction_clustered_HDs | Clustered HD Plot |
error_correction_treePlot | Tree Plot |
extractBarcodes | Barcode extraction |
genBaRcode_app | Shiny App |
generateKirchenplot | Plotting a Kirchenplot |
generateTimeSeriesData | Generating Time Series Data Object |
getBackbone | Accessing the Barcode Backbone slot of a BCdat objects. |
getBackboneSelection | Predefined Barcode Backbone Sequences |
getLabel | Accessing the Label slot of a BCdat objects. |
getReads | Accessing the Read-Count slot of a BCdat objects. |
getResultsDir | Accessing the Results Directory slot of a BCdat objects. |
ggplotDistanceGraph | Plotting a Distance Network |
ggplotDistanceGraph_EC | Plotting a Distance Network (error correction) |
hybridsIdentification | Identifies hybrid barcodes |
plotClusterGgTree | Plotting a Cluster ggTree |
plotClusterTree | Plotting a Cluster Tree |
plotDistanceIgraph | Plotting a Distance Network |
plotDistanceVisNetwork | Plotting a Distance Network |
plotDistanceVisNetwork_EC | Plotting a Distance Network (error correction) |
plotNucFrequency | Plotting Nucleotide Frequency |
plotQualityScoreDis | Plotting Quality Score Distribution |
plotQualityScorePerCycle | Plotting Quality Score per Cycle |
plotReadFrequencies | Plotting a Barplot |
plotSeqLogo | Plots a sequence logo |
plotTimeSeries | Plotting Time Series Data |
plotVennDiagram | Plotting a VennDiagram |
prepareDatObject | Data Object Preparation |
processingRawData | Data processing |
qualityFiltering | Quality Filtering |
readBCdat | Data Input |
setBackbone | Replacing the Barcode Backbone slot of a BCdat objects. |
setLabel | Replacing the Label slot of a BCdat objects. |
setReads | Replacing the Read-Count slot of a BCdat objects. |
setResultsDir | Replacing the Results Directory slot of a BCdat objects. |
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