Files in genBaRcode
Analysis and Visualization Tools for Genetic Barcode Data

MD5
DESCRIPTION
NAMESPACE
inst/doc/genBaRcode_Vignette.R inst/doc/genBaRcode_GUI_Vignette.Rmd inst/doc/genBaRcode_GUI_Vignette.pdf inst/doc/genBaRcode_Vignette.pdf inst/doc/genBaRcode_GUI_Vignette.R inst/doc/genBaRcode_Vignette.Rmd inst/shiny_app/server.R inst/shiny_app/ui.R
inst/extdata/test_data.fastq.gz
inst/extdata/test_BCs.csv
inst/extdata/knownBCs.txt
vignettes/genBaRcode_GUI_Vignette.Rmd vignettes/genBaRcode_Vignette.Rmd
vignettes/images/app6.png
vignettes/images/app6-2.png
vignettes/images/app2.png
vignettes/images/app1.png
vignettes/images/app5-2.png
vignettes/images/app7-2.png
vignettes/images/app5-3.png
vignettes/images/app3.png
vignettes/images/app4.png
vignettes/images/app5.png
vignettes/images/app3-2.png
vignettes/images/app7.png
vignettes/images/app0.png
vignettes/images/app8-2.png
vignettes/images/app8.png
vignettes/images/app9.png
R/data.R R/error_correction_function.R R/BCdata-class.R R/helper_functions.R R/raw_data_processing.R R/plot_functions.R R/BCdata-class-methods.R R/analysis_functions.R man/error_correction_circlePlot.Rd man/plotVennDiagram.Rd man/processingRawData.Rd man/dot-generateColors.Rd man/setResultsDir.Rd man/setBackbone.Rd man/dot-revComp_EqLength.Rd man/readBCdat.Rd man/plotSeqLogo.Rd man/dot-testDirIdentifier.Rd man/plotTimeSeries.Rd man/qualityFiltering.Rd man/getReads.Rd man/plotQualityScorePerCycle.Rd man/dot-getDiagonalIndex.Rd man/dot-getMinDist.Rd man/plotDistanceVisNetwork_EC.Rd man/plotClusterGgTree.Rd man/asBCdat.Rd man/plotDistanceIgraph.Rd man/plotReadFrequencies.Rd man/hybridsIdentification.Rd man/getLabel.Rd man/genBaRcode_app.Rd man/extractBarcodes.Rd man/error_correction_treePlot.Rd man/getBackbone.Rd man/BC_dat_EC.Rd man/generateKirchenplot.Rd man/setLabel.Rd man/com_pair.Rd man/ggplotDistanceGraph_EC.Rd man/getResultsDir.Rd man/errorCorrection.Rd man/error_correction_clustered_HDs.Rd man/plotClusterTree.Rd man/plotDistanceVisNetwork.Rd man/prepareDatObject.Rd man/setReads.Rd man/BCdat-class.Rd man/dot-revComp_UneqLength.Rd man/plotQualityScoreDis.Rd man/dot-revComp.Rd man/dot-createPatternFile.Rd man/createGDF.Rd man/dot-hex2rgbColor.Rd man/plotNucFrequency.Rd man/generateTimeSeriesData.Rd man/ggplotDistanceGraph.Rd man/BC_dat.Rd man/dot-getBarcodeFilter.Rd man/dot-getWobblePos.Rd man/getBackboneSelection.Rd
build/vignette.rds
tests/testthat.R tests/testthat/test_analysis_functions.R tests/testthat/test_raw_data_functions.R tests/testthat/test_helper_functions.R tests/testthat/test_error_correction.R
data/BC_dat.RData
data/BC_dat_EC.RData
genBaRcode documentation built on Oct. 30, 2019, 9:55 a.m.