Files in genBaRcode
Analysis and Visualization Tools for Genetic Barcode Data
MD5
NAMESPACE
DESCRIPTION
R/raw_data_processing.R
R/error_correction_function.R
R/plot_functions.R
R/data.R
R/analysis_functions.R
R/BCdata-class-methods.R
R/BCdata-class.R
R/helper_functions.R
inst/doc/genBaRcode_Vignette.R
inst/doc/genBaRcode_Vignette.pdf
inst/doc/genBaRcode_GUI_Vignette.Rmd
inst/doc/genBaRcode_Vignette.Rmd
inst/doc/genBaRcode_GUI_Vignette.pdf
inst/doc/genBaRcode_GUI_Vignette.R
inst/extdata/test_BCs.csv
inst/extdata/knownBCs.txt
inst/extdata/test_data.fastq.gz
inst/shiny_app/ui.R
inst/shiny_app/server.R
build/vignette.rds
tests/testthat.R
tests/testthat/test_error_correction.R
tests/testthat/test_analysis_functions.R
tests/testthat/test_raw_data_functions.R
tests/testthat/test_helper_functions.R
vignettes/genBaRcode_GUI_Vignette.Rmd
vignettes/genBaRcode_Vignette.Rmd
vignettes/images/app5-3.png
vignettes/images/app5-2.png
vignettes/images/app4.png
vignettes/images/app7.png
vignettes/images/app2.png
vignettes/images/app6-2.png
vignettes/images/app3-2.png
vignettes/images/app1.png
vignettes/images/app7-2.png
vignettes/images/app6.png
vignettes/images/app9.png
vignettes/images/app3.png
vignettes/images/app0.png
vignettes/images/app5.png
vignettes/images/app8-2.png
vignettes/images/app8.png
data/BC_dat_EC.RData
data/BC_dat.RData
man/dot-revComp_UneqLength.Rd
man/getLabel.Rd
man/plotClusterTree.Rd
man/setResultsDir.Rd
man/dot-getWobblePos.Rd
man/readBCdat.Rd
man/error_correction_clustered_HDs.Rd
man/dot-revComp.Rd
man/plotQualityScoreDis.Rd
man/generateKirchenplot.Rd
man/plotVennDiagram.Rd
man/setLabel.Rd
man/getBackboneSelection.Rd
man/plotNucFrequency.Rd
man/getResultsDir.Rd
man/plotQualityScorePerCycle.Rd
man/errorCorrection.Rd
man/plotDistanceVisNetwork.Rd
man/prepareDatObject.Rd
man/asBCdat.Rd
man/plotReadFrequencies.Rd
man/dot-hex2rgbColor.Rd
man/plotTimeSeries.Rd
man/dot-getBarcodeFilter.Rd
man/generateTimeSeriesData.Rd
man/ggplotDistanceGraph_EC.Rd
man/ggplotDistanceGraph.Rd
man/BCdat-class.Rd
man/plotClusterGgTree.Rd
man/dot-testDirIdentifier.Rd
man/error_correction_circlePlot.Rd
man/dot-getMinDist.Rd
man/setBackbone.Rd
man/extractBarcodes.Rd
man/plotDistanceVisNetwork_EC.Rd
man/plotDistanceIgraph.Rd
man/BC_dat.Rd
man/getReads.Rd
man/com_pair.Rd
man/plotSeqLogo.Rd
man/qualityFiltering.Rd
man/processingRawData.Rd
man/getBackbone.Rd
man/dot-getDiagonalIndex.Rd
man/setReads.Rd
man/dot-createPatternFile.Rd
man/dot-generateColors.Rd
man/createGDF.Rd
man/error_correction_treePlot.Rd
man/genBaRcode_app.Rd
man/dot-revComp_EqLength.Rd
man/BC_dat_EC.Rd
man/hybridsIdentification.Rd
