inst/doc/genBaRcode_GUI_Vignette.R

In genBaRcode: Analysis and Visualization Tools for Genetic Barcode Data

## ---- include = FALSE---------------------------------------------------------

  knitr::opts_chunk$set(
    dpi = 60,
    fig.retina = 1,
    collapse = FALSE,
    comment = "#>",
    echo = FALSE
  )

  library(genBaRcode)


## ----eval=FALSE, echo = TRUE--------------------------------------------------
#  
#    # start Shiny app with the package internal test data file
#    genBaRcode_app()
#  
#    # start Shiny app with access to a predefined directory
#    genBaRcode_app(dat_dir = "/path/to/my/data/")
#  

## ---- out.width = "100%", fig.align='center'----------------------------------

  knitr::include_graphics("images/app0.png")
  #knitr::include_graphics("images/app2.png")
  

## ---- out.width = "25%"-------------------------------------------------------

  knitr::include_graphics("images/app3.png")


## ---- out.width = "80%"-------------------------------------------------------

  knitr::include_graphics("images/app4.png")
  

## ---- out.width = "95%"-------------------------------------------------------

  knitr::include_graphics("images/app5.png")


## ---- out.width = "95%"-------------------------------------------------------
  knitr::include_graphics("images/app5-2.png")

## ---- out.width = "95%"-------------------------------------------------------

  knitr::include_graphics("images/app5-3.png")
  

## ---- out.width = "95%"-------------------------------------------------------

  knitr::include_graphics("images/app6.png")


## ---- out.width = "95%"-------------------------------------------------------

  knitr::include_graphics("images/app6-2.png")
  

## ---- out.width = "95%"-------------------------------------------------------

  knitr::include_graphics("images/app7.png")


## ---- out.width = "95%"-------------------------------------------------------

  knitr::include_graphics("images/app7-2.png")


## ---- out.width = "73%"-------------------------------------------------------

  knitr::include_graphics("images/app8.png")


## ---- out.width = "73%"-------------------------------------------------------

  knitr::include_graphics("images/app8-2.png")
  

## ---- out.width = "95%"-------------------------------------------------------

  knitr::include_graphics("images/app9.png")