plotReadFrequencies: Plotting a Barplot

In genBaRcode: Analysis and Visualization Tools for Genetic Barcode Data

Plotting a Barplot

Description

Generates a barplot visualising the abundances of unique read count frequencies.

Usage

plotReadFrequencies(
  BC_dat,
  b = 30,
  bw = NULL,
  show_it = FALSE,
  log = FALSE,
  dens = FALSE
)

Arguments

BC_dat	a BCdat object.
b	an integer value, defining the number of bins. Overridden by bw. Defaults to 30. (see '?ggplot2::geom_histogram')
bw	an integer value, defining the width of the bins.
show_it	a logical vaue. If TRUE, the respective values are printed on the console?
log	a logical vaue. If TRUE, the y-axis will be on a log scale.
dens	a logical vaue. If TRUE, the density of the read frequencies will be plotted.

Value

ggplot2 object

Examples

data(BC_dat)
plotReadFrequencies(BC_dat, b = 10, show_it = TRUE)

genBaRcode documentation built on April 4, 2025, 2:07 a.m.