plotQualityScoreDis: Plotting Quality Score Distribution
In genBaRcode: Analysis and Visualization Tools for Genetic Barcode Data

plotQualityScoreDis

R Documentation

Plotting Quality Score Distribution

Description

Creates a plot of the quality values accommodated by the fastq file.

Usage

plotQualityScoreDis(source_dir, file_name, type = "median", rel = FALSE)

Arguments

`source_dir`	a character string of the path to the source directory.
`file_name`	a character string of the file name.
`type`	a character string, possible values are "mean" and "median".
`rel`	a logical value. If TRUE the y-axis will show relative frequency instead of the absolut counts.

Value

a ggplot2 object.

Examples


## Not run: 

source_dir <- system.file("extdata", package = "genBaRcode")

plotQualityScoreDis(source_dir, file_name = "test_data.fastq", type = "mean")


## End(Not run)

genBaRcode documentation built on March 31, 2023, 11:02 p.m.