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geneHummus: A Pipeline to Define Gene Families in Legumes and Beyond
A pipeline with high specificity and sensitivity in extracting proteins from the RefSeq database (National Center for Biotechnology Information). Manual identification of gene families is highly time-consuming and laborious, requiring an iterative process of manual and computational analysis to identify members of a given family. The pipelines implements an automatic approach for the identification of gene families based on the conserved domains that specifically define that family. See Die et al. (2018) <doi:10.1101/436659> for more information and examples.
Getting started
Browse package contents
Package details |
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| Author | Jose V. Die [aut, cre] (<https://orcid.org/0000-0002-7506-8590>), Moamen M. Elmassry [ctb], Kimberly H. LeBlanc [ctb], Olaitan I. Awe [ctb], Allissa Dillman [ctb], Ben Busby [aut] |
| Maintainer | Jose V. Die <jose.die@uco.es> |
| License | MIT + file LICENSE |
| Version | 1.0.11 |
| URL | https://github.com/NCBI-Hackathons/GeneHummus |
| Package repository | View on CRAN |
| Installation |
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