geneHummus: A Pipeline to Define Gene Families in Legumes and Beyond

A pipeline with high specificity and sensitivity in extracting proteins from the RefSeq database (National Center for Biotechnology Information). Manual identification of gene families is highly time-consuming and laborious, requiring an iterative process of manual and computational analysis to identify members of a given family. The pipelines implements an automatic approach for the identification of gene families based on the conserved domains that specifically define that family. See Die et al. (2018) <doi:10.1101/436659> for more information and examples.

Getting started

Package details

AuthorJose V. Die [aut, cre] (<https://orcid.org/0000-0002-7506-8590>), Moamen M. Elmassry [ctb], Kimberly H. LeBlanc [ctb], Olaitan I. Awe [ctb], Allissa Dillman [ctb], Ben Busby [aut]
MaintainerJose V. Die <[email protected]>
LicenseMIT + file LICENSE
Version1.0.11
URL https://github.com/NCBI-Hackathons/GeneHummus
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("geneHummus")

Try the geneHummus package in your browser

Any scripts or data that you put into this service are public.

geneHummus documentation built on April 5, 2019, 1:05 a.m.